RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 EPHX4Q8IUS5 362 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 LRRC71Q8N4P6 559 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 TDRD5Q8NAT2 981 aaKnown RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 FEZF2Q8TBJ5 459 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 NAT9Q9BTE0 207 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 TDP2O95551 362 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 CACNB2Q08289 660 aaPredicted RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 TMEM26Q6ZUK4 368 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 NYAP1Q6ZVC0 841 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 RUVBL2Q9Y230 463 aaKnown RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 CFAP74Q9C0B2 1584 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 PUDPQ08623 228 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 SMTNL2Q2TAL5 461 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 TBCELQ5QJ74 424 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 RAD9BQ6WBX8 426 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 GDPD5Q8WTR4 605 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 TRIM39Q9HCM9 518 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 TMEM8AQ9HCN3 771 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 ZSWIM7Q19AV6 140 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 KLHL24Q6TFL4 600 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 KCTD10Q9H3F6 313 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 RAVER2Q9HCJ3 691 aaKnown RBP14.34□□□□□ -0.11
CSPG4-201ENST00000308508 SPACA6W5XKT8 324 aa14.34□□□□□ -0.11
CSPG4-201ENST00000308508 CPSF1Q10570 1443 aaKnown RBP14.33□□□□□ -0.11
CSPG4-201ENST00000308508 P4HA2O15460 535 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 KLHL41O60662 606 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 CDC16Q13042 620 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 MRNIPQ6NTE8 343 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 PMF1Q6P1K2 205 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 B3GNT6Q6ZMB0 384 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 SLC7A14Q8TBB6 771 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 OSCP1Q8WVF1 389 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 FUT8Q9BYC5 575 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 ZBTB1Q9Y2K1 713 aa14.33□□□□□ -0.11
CSPG4-201ENST00000308508 EFCAB10A6NFE3 127 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 AHCYL1O43865 530 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 CRKP46108 304 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 PHKG1Q16816 387 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 CCDC80Q76M96 950 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 UBOX5O94941 541 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 MYL12AP19105 171 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 NMT1P30419 496 aaKnown RBP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 NDUFAF6Q330K2 333 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 CACTIN-AS1Q8N1I8 211 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 TINF2Q9BSI4 451 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 ROGDIQ9GZN7 287 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 SHROOM2Q13796 1616 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 C2orf81A6NN90 581 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 KIF28PB7ZC32 967 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 TEX28O15482 410 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 PRKCBP05771 671 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 DARSP14868 501 aaKnown RBP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 KCNJ1P48048 391 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 TSHZ1Q6ZSZ6 1077 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 C11orf96Q7Z7L8 435 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 NT5C1AQ9BXI3 368 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 PNMA8BQ9ULN7 279 aaPredicted RBP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 NPHP3-ACAD11A0A0J9YXS1 232 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 RGS20O76081 388 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 ATP5BP06576 529 aaKnown RBP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 RARGP13631 454 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 RGS7P49802 495 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 CSNK2BP67870 215 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 GRAPQ13588 217 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 TMPRSS6Q8IU80 811 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 GRAPLQ8TC17 118 aaPredicted RBP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 RPS6KL1Q9Y6S9 549 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 CDK12Q9NYV4 1490 aaPredicted RBP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 NMT2O60551 498 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 GPR162Q16538 588 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 ZNF624Q9P2J8 865 aaPredicted RBP14.33□□□□□ -0.12
CSPG4-201ENST00000308508 C15orf41Q9Y2V0 281 aa14.33□□□□□ -0.12
CSPG4-201ENST00000308508 FDX1P10109 184 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 MKRN4PQ13434 485 aaPredicted RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 TFDP3Q5H9I0 405 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 DEFB107AQ8IZN7 70 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 IARS2Q9NSE4 1012 aaKnown RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 NCKIPSDQ9NZQ3 722 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 VAC14Q08AM6 782 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 RGS21Q2M5E4 152 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 PGS1Q32NB8 556 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 MZT2BQ6NZ67 158 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 CLEC4GQ6UXB4 293 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 SLC13A5Q86YT5 568 aaPredicted RBP14.32□□□□□ -0.12
CSPG4-201ENST00000308508 BTBD3Q9Y2F9 522 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 SDR42E2A6NKP2 422 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 DGAT1O75907 488 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 ATG7O95352 703 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 CDC73Q6P1J9 531 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 MIER2Q8N344 545 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 RPS6KB2Q9UBS0 482 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 AGAP1Q9UPQ3 857 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 HEG1Q9ULI3 1381 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 MROH7Q68CQ1 1323 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 A0A087WXM4 84 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 RAD17O75943 681 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 CD4P01730 458 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 SLC22A9Q8IVM8 553 aa14.32□□□□□ -0.12
CSPG4-201ENST00000308508 RNF149Q8NC42 400 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms