RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SPOCD1Q6ZMY3 1216 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 CLEC10AQ8IUN9 316 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 TDRD5Q8NAT2 981 aaKnown RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 VPS37AQ8NEZ2 397 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 SLC7A14Q8TBB6 771 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 CYP39A1Q9NYL5 469 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 RHOBTB1O94844 696 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 PROSCO94903 275 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 BCL10O95999 233 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 PDGFRBP09619 1106 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 GRIK1P39086 918 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 NT5DC1Q5TFE4 455 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 LRRC8DQ7L1W4 858 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 HEATR4Q86WZ0 1026 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 UNC45BQ8IWX7 931 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 SNX31Q8N9S9 440 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 DIS3LQ8TF46 1054 aaKnown RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 ZNF184Q99676 751 aaPredicted RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 PRKCEQ02156 737 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 MTFR1Q15390 333 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 TMC5Q6UXY8 1006 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 RINLQ6ZS11 566 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 EFHBQ8N7U6 833 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 PRCCQ92733 491 aaPredicted RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 TMEM121Q9BTD3 319 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 NAT9Q9BTE0 207 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 PAIP1Q9H074 479 aaKnown RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 ZCWPW1Q9H0M4 648 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 EHD4Q9H223 541 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 ANKEF1Q9NU02 776 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 PRR12Q9ULL5 1215 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 RPS6KA5O75582 802 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 CPA3P15088 417 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 ATP4AP20648 1035 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 RPL21P46778 160 aaKnown RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 DCAF6Q58WW2 860 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 ZMYND8Q9ULU4 1186 aaPredicted RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 CASP4P49662 377 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 EIF2B2P49770 351 aaKnown RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 TP53BP2Q13625 1128 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 CREG2Q8IUH2 290 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 SPATA2LQ8IUW3 424 aaPredicted RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 SESN1Q9Y6P5 492 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 CLTCQ00610 1675 aaKnown RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 ZC3H13Q5T200 1668 aaKnown RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 IQCA1LA6NCM1 817 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 SRRM3A6NNA2 597 aaPredicted RBP17.93■□□□□ 0.46
SYNPO-201ENST00000307662 ANXA9O76027 345 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 TOMM70O94826 608 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 IMPDH2P12268 514 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 TAF2Q6P1X5 1199 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 MMP19Q99542 508 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 ADARP55265 1226 aaKnown RBP17.93■□□□□ 0.46
SYNPO-201ENST00000307662 RPL10AP62906 217 aaKnown RBP17.93■□□□□ 0.46
SYNPO-201ENST00000307662 TRIM25Q14258 630 aaKnown RBP17.93■□□□□ 0.46
SYNPO-201ENST00000307662 PDK2Q15119 407 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 CENPTQ96BT3 561 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 GGA2Q9UJY4 613 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 EIF3LQ9Y262 564 aaKnown RBP17.93■□□□□ 0.46
SYNPO-201ENST00000307662 RAG1P15918 1043 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 NFYCQ13952 458 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 SGO1Q5FBB7 561 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 CENPLQ8N0S6 344 aaPredicted RBP17.93■□□□□ 0.46
SYNPO-201ENST00000307662 ZNF333Q96JL9 665 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 KCTD10Q9H3F6 313 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 MROH7Q68CQ1 1323 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 TRIM24O15164 1050 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 SYTL3Q4VX76 610 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 STRIP1Q5VSL9 837 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 DDX50Q9BQ39 737 aaKnown RBP17.93■□□□□ 0.46
SYNPO-201ENST00000307662 DIABLOQ9NR28 239 aa17.93■□□□□ 0.46
SYNPO-201ENST00000307662 ADAMTS13Q76LX8 1427 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 GNL1P36915 607 aaPredicted RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 ATF7IP2Q5U623 682 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 CRELD2Q6UXH1 353 aaPredicted RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 COPG2Q9UBF2 871 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 NRXN1Q9ULB1 1477 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 HEATR9A2RTY3 570 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 ZC3H11AO75152 810 aaKnown RBP eCLIP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 CBX6O95503 412 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 PTRHD1Q6GMV3 140 aaKnown RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 DCLK3Q9C098 648 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 RNPEPL1Q9HAU8 725 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 SHOC2Q9UQ13 582 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 MED24O75448 989 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 TNFRSF8P28908 595 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 TBCELQ5QJ74 424 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 APOBEC3FQ8IUX4 373 aaKnown RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 TCP10LQ8TDR4 215 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 USP13Q92995 863 aaPredicted RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 LRRC40Q9H9A6 602 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 FARP1Q9Y4F1 1045 aaPredicted RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 ATP5BP06576 529 aaKnown RBP17.92■□□□□ 0.46
SYNPO-201ENST00000307662 PGK2P07205 417 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 RRM1P23921 792 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 PRR5LQ6MZQ0 368 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 CD302Q8IX05 232 aa17.92■□□□□ 0.46
SYNPO-201ENST00000307662 EIF1ADQ8N9N8 165 aaKnown RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms