RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 FAM200BP0CF97 657 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 MAPTP10636 758 aaKnown RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ZNF23P17027 643 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 DRD4P21917 467 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 PRKCIP41743 596 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 DALRD3Q5D0E6 543 aaKnown RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 TDRD5Q8NAT2 981 aaKnown RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 HPDLQ96IR7 371 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 PRMT7Q9NVM4 692 aaPredicted RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 CD274Q9NZQ7 290 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 RUVBL2Q9Y230 463 aaKnown RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 PDGFRBP09619 1106 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 FCGR1AP12314 374 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 CYP24A1Q07973 514 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 EP400NLQ6ZTU2 488 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 RRM2BQ7LG56 351 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 UNC45BQ8IWX7 931 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ZCCHC9Q8N567 271 aaKnown RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 GPRASP2Q96D09 838 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ECSITQ9BQ95 431 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 DNAJC18Q9H819 358 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 PECAM1P16284 738 aaPredicted RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 NOP9Q86U38 636 aaKnown RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 SLC25A41Q8N5S1 370 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 SLC7A14Q8TBB6 771 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ETAA1Q9NY74 926 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 TJP2Q9UDY2 1190 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ATP6V1E1P36543 226 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 RPL10AP62906 217 aaKnown RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ZFP1Q6P2D0 407 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ACTL9Q8TC94 416 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 SGF29Q96ES7 293 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 CGRRF1Q99675 332 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 TMEM79Q9BSE2 394 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 KIAA1257Q9ULG3 409 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 V9GYQ6 96 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ZNF839A8K0R7 811 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 MAGEB2O15479 319 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 SERPINE1P05121 402 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 NUDT17P0C025 328 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 NPTX2P47972 431 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 SLC1A6P48664 564 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ABRAQ8N0Z2 381 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 STX19Q8N4C7 294 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 OTUB1Q96FW1 271 aaPredicted RBP13.29□□□□□ -0.28
COL3A1-201ENST00000304636 VCPIP1Q96JH7 1222 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 GCNAQ96QF7 691 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 BTBD7Q9P203 1132 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 MROH7Q68CQ1 1323 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 AHCYL1O43865 530 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 TXNP10599 105 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 AUHQ13825 339 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 RRP1BQ14684 758 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 DEPDC1Q5TB30 811 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 TRIM69Q86WT6 500 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 BLOC1S4Q9NUP1 217 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 USP18Q9UMW8 372 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 PIK3C2BO00750 1634 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 NFIBO00712 420 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 HIST1H2AGP0C0S8 130 aaPredicted RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 HIST1H2ADP20671 130 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 PCSK7Q16549 785 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 MIIPQ5JXC2 388 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 ADGRA1Q86SQ6 560 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 APOBEC3FQ8IUX4 373 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 CCDC103Q8IW40 242 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 HIST1H2AHQ96KK5 128 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 HIST1H2AJQ99878 128 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 H2AFJQ9BTM1 129 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 UBE2OQ9C0C9 1292 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 SAC3D1A6NKF1 404 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 VDRP11473 427 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 RAG1P15918 1043 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 PLEKHA7Q6IQ23 1121 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 SRPK1Q96SB4 655 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 MMTAG2Q9BU76 263 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 GPRC5CQ9NQ84 441 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 TCF7L2Q9NQB0 619 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 PCYOX1Q9UHG3 505 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 ITSN1Q15811 1721 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 ADGRA2Q96PE1 1338 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 RCCD1A6NED2 376 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 SOAT2O75908 522 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 DLGAP3O95886 979 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 SHBGP04278 402 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 ELK3P41970 407 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 HMGCS2P54868 508 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 PPIDQ08752 370 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 BMPR2Q13873 1038 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 RNF219Q5W0B1 726 aaPredicted RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 CCDC81Q6ZN84 652 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 POP1Q99575 1024 aaKnown RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 AVENQ9NQS1 362 aaPredicted RBP13.28□□□□□ -0.28
COL3A1-201ENST00000304636 KCNK4Q9NYG8 393 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 C2CD2Q9Y426 696 aa13.28□□□□□ -0.28
COL3A1-201ENST00000304636 SUPT7LO94864 414 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 GYS1P13807 737 aa13.27□□□□□ -0.28
COL3A1-201ENST00000304636 DRG2P55039 364 aaKnown RBP13.27□□□□□ -0.28
COL3A1-201ENST00000304636 CASP7P55210 303 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms