RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CACNA1SQ13698 1873 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 NUDT17P0C025 328 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 PHKA2P46019 1235 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 EFHC1Q5JVL4 640 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.96■□□□□ 0.15
SHH-201ENST00000297261 CDCA5Q96FF9 252 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 TARS2Q9BW92 718 aaKnown RBP15.96■□□□□ 0.15
SHH-201ENST00000297261 GRID1Q9ULK0 1009 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 RIPK3Q9Y572 518 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 GRAP2O75791 330 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 ETS2P15036 469 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 SURF1Q15526 300 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 APTXQ7Z2E3 356 aaKnown RBP15.96■□□□□ 0.15
SHH-201ENST00000297261 PID1Q7Z2X4 250 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 KIAA2013Q8IYS2 634 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 TRIM15Q9C019 465 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 KLHL4Q9C0H6 718 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 C2orf40Q9H1Z8 148 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 TMEM8AQ9HCN3 771 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 TMCC1O94876 653 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 TTC39BQ5VTQ0 682 aaPredicted RBP15.96■□□□□ 0.15
SHH-201ENST00000297261 KLC3Q6P597 504 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 FBXO16Q8IX29 292 aaPredicted RBP15.96■□□□□ 0.15
SHH-201ENST00000297261 INPP5DQ92835 1189 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 ADNPQ9H2P0 1102 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 SNX25Q9H3E2 840 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 CLIC5Q9NZA1 410 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 SUN2Q9UH99 717 aa15.96■□□□□ 0.15
SHH-201ENST00000297261 TIAM2Q8IVF5 1701 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 PSMG1O95456 288 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 PRKCBP05771 671 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 HSD17B4P51659 736 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 OASLQ15646 514 aaKnown RBP15.96■□□□□ 0.14
SHH-201ENST00000297261 CCNG2Q16589 344 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 OR6B3Q8NGW1 331 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 CYGBQ8WWM9 190 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 TAGLN3Q9UI15 199 aa15.96■□□□□ 0.14
SHH-201ENST00000297261 MAN1A2O60476 641 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 CETPP11597 493 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 PDGFRAP16234 1089 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 RPA3P35244 121 aaPredicted RBP15.95■□□□□ 0.14
SHH-201ENST00000297261 BMPR2Q13873 1038 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 PIGHQ14442 188 aaPredicted RBP15.95■□□□□ 0.14
SHH-201ENST00000297261 WDR72Q3MJ13 1102 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 LACTB2Q53H82 288 aaPredicted RBP15.95■□□□□ 0.14
SHH-201ENST00000297261 PGBD4Q96DM1 585 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 SMARCAD1Q9H4L7 1026 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 ACP6Q9NPH0 428 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 IL1RAPL1Q9NZN1 696 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 CNTNAP1P78357 1384 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 LAMA4Q16363 1823 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 SPDYE16A6NNV3 312 aaPredicted RBP15.95■□□□□ 0.14
SHH-201ENST00000297261 FKBP6O75344 327 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 CELF2O95319 508 aaKnown RBP15.95■□□□□ 0.14
SHH-201ENST00000297261 IL10P22301 178 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 EFNA5P52803 228 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 RNF220Q5VTB9 566 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 CATSPER4Q7RTX7 472 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 COL20A1Q9P218 1284 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 EME2A4GXA9 379 aaPredicted RBP15.95■□□□□ 0.14
SHH-201ENST00000297261 P4HA2O15460 535 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 TLR2O60603 784 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 GH1P01241 217 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 CYP4A22Q5TCH4 519 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 DNERQ8NFT8 737 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 C17orf75Q9HAS0 396 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 SLC24A2Q9UI40 661 aa15.95■□□□□ 0.14
SHH-201ENST00000297261 DPPA5A6NC42 116 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 MEI4A8MW99 385 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 CXCL11O14625 94 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 RIPK1Q13546 671 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 NCOA4Q13772 614 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 DEFB107AQ8IZN7 70 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 ALG3Q92685 438 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 MRPL1Q9BYD6 325 aaKnown RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 DNAJC16Q9Y2G8 782 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 GTPBP10A4D1E9 387 aaKnown RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 MGRN1O60291 552 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 TAC1P20366 129 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 YWHAHQ04917 246 aaPredicted RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 KCTD21Q4G0X4 260 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 TCHHL1Q5QJ38 904 aaPredicted RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 ZBTB41Q5SVQ8 909 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 FITM2Q8N6M3 262 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 TAS1R2Q8TE23 839 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 PYDC1Q8WXC3 89 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 DCLK3Q9C098 648 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 IPO11Q9UI26 975 aaKnown RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 TNRC6CQ9HCJ0 1690 aaKnown RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 IGLV3-22A0A075B6J6 115 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 FOXO6A8MYZ6 492 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 SPAG6O75602 509 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 PGM3O95394 542 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 TAP1Q03518 808 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 PPATQ06203 517 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 PPIDQ08752 370 aaKnown RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 ZNF786Q8N393 782 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 SERPINB5P36952 375 aa15.94■□□□□ 0.14
SHH-201ENST00000297261 OTUD4Q01804 1114 aaKnown RBP15.94■□□□□ 0.14
SHH-201ENST00000297261 CDKL3Q8IVW4 592 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms