RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 CREB3L4Q8TEY5 395 aa5□□□□□ -1.61
CD44-202ENST00000278385 ZNF606Q8WXB4 792 aa5□□□□□ -1.61
CD44-202ENST00000278385 CLEC4DQ8WXI8 215 aa5□□□□□ -1.61
CD44-202ENST00000278385 TAF4BQ92750 862 aa5□□□□□ -1.61
CD44-202ENST00000278385 UROC1Q96N76 676 aa5□□□□□ -1.61
CD44-202ENST00000278385 PDCD2LQ9BRP1 358 aa5□□□□□ -1.61
CD44-202ENST00000278385 BRIP1Q9BX63 1249 aa5□□□□□ -1.61
CD44-202ENST00000278385 CD244Q9BZW8 370 aa5□□□□□ -1.61
CD44-202ENST00000278385 OR10A4Q9H209 315 aa5□□□□□ -1.61
CD44-202ENST00000278385 CCDC177Q9NQR7 707 aaPredicted RBP5□□□□□ -1.61
CD44-202ENST00000278385 DLL4Q9NR61 685 aa5□□□□□ -1.61
CD44-202ENST00000278385 KRT84Q9NSB2 600 aa5□□□□□ -1.61
CD44-202ENST00000278385 ARHGAP20Q9P2F6 1191 aa5□□□□□ -1.61
CD44-202ENST00000278385 CPSF2Q9P2I0 782 aaKnown RBP5□□□□□ -1.61
CD44-202ENST00000278385 FTSJ1Q9UET6 329 aa5□□□□□ -1.61
CD44-202ENST00000278385 EIF2B4Q9UI10 523 aaKnown RBP5□□□□□ -1.61
CD44-202ENST00000278385 COG5Q9UP83 839 aa5□□□□□ -1.61
CD44-202ENST00000278385 LTN1O94822 1766 aa5□□□□□ -1.61
CD44-202ENST00000278385 RGPD5Q99666 1765 aa5□□□□□ -1.61
CD44-202ENST00000278385 RREB1Q92766 1687 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 EP400Q96L91 3159 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 SYNJ2BP-COX16A0A087WUM0 186 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 CCDC196A0A1B0GTZ2 297 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 A0A1W2PPC4 97 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 FAM25EA8MYX2 175 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 NDC80O14777 642 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 KIF5CO60282 957 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 LRG1P02750 347 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 PTPN1P18031 435 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 CHMP24386 653 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 RPL13P26373 211 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 EEF1GP26641 437 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 IL12RB1P42701 662 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 MSH2P43246 934 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 ALDH3A2P51648 485 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 EPHA5P54756 1037 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 ITGA1P56199 1179 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 JAM2P57087 298 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 LACTBP83111 547 aaPredicted RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 SMAD3P84022 425 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 SRSF2Q01130 221 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 CREMQ03060 361 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 COX10Q12887 443 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 DAG1Q14118 895 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 SEMA3AQ14563 771 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 SURF1Q15526 300 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 HABP4Q5JVS0 413 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 TANGO2Q6ICL3 276 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 CRTC1Q6UUV9 634 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 LIPIQ6XZB0 460 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 ZNF783Q6ZMS7 281 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 GALNT7Q86SF2 657 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 STK32CQ86UX6 486 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 HERC6Q8IVU3 1022 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 UNC45BQ8IWX7 931 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 RBM12BQ8IXT5 1001 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 CARFQ8N187 725 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 NUP93Q8N1F7 819 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 LRRC71Q8N4P6 559 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 CCDC33Q8N5R6 958 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 LINC00482Q8N8I6 264 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 CEP70Q8NHQ1 597 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 ZUFSPQ96AP4 578 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 ACAP3Q96P50 834 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 KCNC2Q96PR1 638 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 PPP1R9BQ96SB3 815 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 PAIP1Q9H074 479 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 MS4A5Q9H3V2 200 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 PCIF1Q9H4Z3 704 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 PNPLA8Q9NP80 782 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 KCTD5Q9NXV2 234 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 HSPBP1Q9NZL4 362 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 ADD3Q9UEY8 706 aaKnown RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 RASAL2Q9UJF2 1139 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 PLA2G2DQ9UNK4 145 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 NUDCQ9Y266 331 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 KDRP35968 1356 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 NHSQ6T4R5 1651 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 RGPD3A6NKT7 1758 aaPredicted RBP4.99□□□□□ -1.61
CD44-202ENST00000278385 RGPD4Q7Z3J3 1758 aa4.99□□□□□ -1.61
CD44-202ENST00000278385 NUP188Q5SRE5 1749 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 A0A088AWK7 358 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 SH3D21A4FU49 640 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 CCDC69A6NI79 296 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 BOLA2-SMG1P6H3BVE0 249 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 H7C1D1 291 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 TRIM38O00635 465 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 SCDO00767 359 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 IPO8O15397 1037 aaKnown RBP4.98□□□□□ -1.61
CD44-202ENST00000278385 CLASP2O75122 1294 aaKnown RBP4.98□□□□□ -1.61
CD44-202ENST00000278385 KRT37O76014 449 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 APBB3O95704 486 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 PLA2G1BP04054 148 aaKnown RBP4.98□□□□□ -1.61
CD44-202ENST00000278385 HMOX1P09601 288 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 SFTPCP11686 197 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 ALAS1P13196 640 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 IL4RP24394 825 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 YY1P25490 414 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 THBS2P35442 1172 aa4.98□□□□□ -1.61
CD44-202ENST00000278385 HADHAP40939 763 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms