RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ZDHHC24Q6UX98 284 aa16.06■□□□□ 0.16
SF3B4-201ENST00000271628 TMEM86AQ8N2M4 240 aa16.06■□□□□ 0.16
SF3B4-201ENST00000271628 CCDC89Q8N998 374 aa16.06■□□□□ 0.16
SF3B4-201ENST00000271628 CMASQ8NFW8 434 aaPredicted RBP16.06■□□□□ 0.16
SF3B4-201ENST00000271628 CCHCR1Q8TD31 782 aa16.06■□□□□ 0.16
SF3B4-201ENST00000271628 RXFP2Q8WXD0 754 aa16.06■□□□□ 0.16
SF3B4-201ENST00000271628 ZWILCHQ9H900 591 aa16.06■□□□□ 0.16
SF3B4-201ENST00000271628 NFS1Q9Y697 457 aa16.06■□□□□ 0.16
SF3B4-201ENST00000271628 THSD7BQ9C0I4 1608 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 MEIS3P2A8K0S8 358 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 GABRDO14764 452 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 CPP00450 1065 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 GHRP10912 638 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 KDELR1P24390 212 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 MIPP30301 263 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 MDH1P40925 334 aaKnown RBP16.05■□□□□ 0.16
SF3B4-201ENST00000271628 RPL34P49207 117 aaKnown RBP16.05■□□□□ 0.16
SF3B4-201ENST00000271628 CAV1Q03135 178 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 ZNF618Q5T7W0 954 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 TTC19Q6DKK2 380 aaPredicted RBP16.05■□□□□ 0.16
SF3B4-201ENST00000271628 AGMOQ6ZNB7 445 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 ZNF365Q70YC5 407 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 ARCQ7LC44 396 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 ANKS1BQ7Z6G8 1248 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 TADA2BQ86TJ2 420 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 TTC13Q8NBP0 860 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 B3GALNT2Q8NCR0 500 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 BBOF1Q8ND07 529 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 UBLCP1Q8WVY7 318 aaPredicted RBP16.05■□□□□ 0.16
SF3B4-201ENST00000271628 FRMD8P1Q9BZ68 369 aaPredicted RBP16.05■□□□□ 0.16
SF3B4-201ENST00000271628 ASIC3Q9UHC3 531 aa16.05■□□□□ 0.16
SF3B4-201ENST00000271628 DRG1Q9Y295 367 aaKnown RBP16.05■□□□□ 0.16
SF3B4-201ENST00000271628 PIK3R2O00459 728 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 DPYSL4O14531 572 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 TRUB2O95900 331 aaKnown RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 PAX3P23760 479 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 IL1R2P27930 398 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 ADORA2BP29275 332 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 LHX1P48742 406 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 APLP1P51693 650 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 BYSLQ13895 437 aaKnown RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 LPIN1Q14693 890 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 SLMAPQ14BN4 828 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 SCUBE3Q8IX30 993 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 KCTD6Q8NC69 237 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 SNF8Q96H20 258 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 SENP8Q96LD8 212 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 HNRNPABQ99729 332 aaKnown RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 TXLNGYQ9BZA5 131 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 TRMT13Q9NUP7 481 aaKnown RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 C3orf70A6NLC5 250 aaPredicted RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 PAPSS1O43252 624 aaPredicted RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 LIASO43766 372 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 CCDC130P13994 396 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 SDC4P31431 198 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 CLCNKBP51801 687 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 DSC3Q14574 896 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 UAP1Q16222 522 aaPredicted RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 TAZQ16635 292 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 SMTNL2Q2TAL5 461 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 TTC31Q49AM3 519 aaPredicted RBP16.04■□□□□ 0.16
SF3B4-201ENST00000271628 KCNT1Q5JUK3 1230 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 SLC2A14Q8TDB8 520 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 LPPQ93052 612 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 RSAD1Q9HA92 442 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 PCSK1NQ9UHG2 260 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 ATP8A1Q9Y2Q0 1164 aa16.04■□□□□ 0.16
SF3B4-201ENST00000271628 PRPSAP2O60256 369 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 PTPN1P18031 435 aaKnown RBP16.03■□□□□ 0.16
SF3B4-201ENST00000271628 ADCY2Q08462 1091 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 KCTD19Q17RG1 926 aaPredicted RBP16.03■□□□□ 0.16
SF3B4-201ENST00000271628 TRIM71Q2Q1W2 868 aaKnown RBP16.03■□□□□ 0.16
SF3B4-201ENST00000271628 BOLA3Q53S33 107 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 GSTA5Q7RTV2 222 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 SLAIN1Q8ND83 568 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 HMX1Q9NP08 348 aaPredicted RBP16.03■□□□□ 0.16
SF3B4-201ENST00000271628 MIOSQ9NXC5 875 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 NEU2Q9Y3R4 380 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 ANKRD65E5RJM6 399 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 XPO1O14980 1071 aaKnown RBP16.03■□□□□ 0.16
SF3B4-201ENST00000271628 HCRTO43612 131 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 ATF2P15336 505 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 SCNN1GP51170 649 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 PMS2P54278 862 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 PRMT2P55345 433 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 EIF3BP55884 814 aaKnown RBP16.03■□□□□ 0.16
SF3B4-201ENST00000271628 GUCY1A3Q02108 690 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 CCDC14Q49A88 953 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 WSCD1Q658N2 575 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 DSTYKQ6XUX3 929 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 MICALCLQ6ZW33 695 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 SLC26A9Q7LBE3 791 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 OSTM1Q86WC4 334 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 MAP7D3Q8IWC1 876 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 ADAM2Q99965 735 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 LPIN3Q9BQK8 851 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 DUSP16Q9BY84 665 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 PABPC3Q9H361 631 aaKnown RBP16.03■□□□□ 0.16
SF3B4-201ENST00000271628 GGA2Q9UJY4 613 aa16.03■□□□□ 0.16
SF3B4-201ENST00000271628 ZNF148Q9UQR1 794 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms