RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PGM2Q96G03 612 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 LRRC4BQ9NT99 713 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 VPS9D1Q9Y2B5 631 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 DTNAQ9Y4J8 743 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 TBC1D4O60343 1298 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SLITRK3O94933 977 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 PTPN4P29074 926 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SERPINB8P50452 374 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 BCAT1P54687 386 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 DENND5BQ6ZUT9 1274 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SCUBE1Q8IWY4 988 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 TATDN2Q93075 761 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 FAM163AQ96GL9 167 aaPredicted RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 DCLK3Q9C098 648 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 GDF3Q9NR23 364 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 AAR2Q9Y312 384 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 FAM32AQ9Y421 112 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 ZNF711Q9Y462 761 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 PCDHA3Q9Y5H8 950 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 E7ENQ6 273 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 CYTH3O43739 400 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 CLASP2O75122 1294 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 H2AFYO75367 372 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 FAM153BP0C7A2 387 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SLC2A3P11169 496 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SERPINB3P29508 390 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ATP6V1E1P36543 226 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 FAM153CQ494X1 144 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 OTOP1Q7RTM1 612 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 PATL1Q86TB9 770 aaKnown RBP11.14□□□□□ -0.63
CD44-201ENST00000263398 EMC1Q8N766 993 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 RFWD2Q8NHY2 731 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 CYP2W1Q8TAV3 490 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SPIRE2Q8WWL2 714 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ZNF606Q8WXB4 792 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 RXFP2Q8WXD0 754 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 CNDP1Q96KN2 507 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SLITRK1Q96PX8 696 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 NDUFA13Q9P0J0 144 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 FAM153AQ9UHL3 310 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 HACL1Q9UJ83 578 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 PCDHB8Q9UN66 801 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 SIK3Q9Y2K2 1263 aa11.14□□□□□ -0.63
CD44-201ENST00000263398 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 KDM4FA0A1W2PPD8 638 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 SOAT2O75908 522 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 PYGMP11217 842 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 PTPN7P35236 360 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 NEK2P51955 445 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 DSG1Q02413 1049 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 TWF1Q12792 350 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 CRYMQ14894 314 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 MTDHQ86UE4 582 aaKnown RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 ATXN2LQ8WWM7 1075 aaKnown RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 AVENQ9NQS1 362 aaPredicted RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 PXMP2Q9NR77 195 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 FRMPD4Q14CM0 1322 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 FAM86B1E9PN63 330 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 SUPT7LO94864 414 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 TFRCP02786 760 aaKnown RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 FAM86B2P0C5J1 330 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 RARAP10276 462 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 ATICP31939 592 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 PRKCIP41743 596 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 RANBP1P43487 201 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 RPL21P46778 160 aaKnown RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 AQP5P55064 265 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 SKOR1P84550 965 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 ORC1Q13415 861 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 CYLC2Q14093 348 aaPredicted RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 GLRA4Q5JXX5 417 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 MRNIPQ6NTE8 343 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 SLFN11Q7Z7L1 901 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 HIC2Q96JB3 615 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 ASCC2Q9H1I8 757 aaPredicted RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 TBC1D23Q9NUY8 699 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 SOX13Q9UN79 622 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 IFT172Q9UG01 1749 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 DNALI1O14645 258 aaPredicted RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 RGL2O15211 777 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 AP1G2O75843 785 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 RHOBTB1O94844 696 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 RALBP11234 206 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 AKT1P31749 480 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 DMC1Q14565 340 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 RASA2Q15283 850 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 TMEM176AQ96HP8 235 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 FOPNLQ96NB1 174 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 RBBP8Q99708 897 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 AP4E1Q9UPM8 1137 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 WTIPA6NIX2 430 aaPredicted RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 CFAP99D6REC4 459 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 SLCO1B7G3V0H7 640 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 STAG3L1P0CL83 205 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 CHRM3P20309 590 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 KCNA4P22459 653 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 ZMAT2Q96NC0 199 aaKnown RBP11.13□□□□□ -0.63
CD44-201ENST00000263398 DYRK4Q9NR20 520 aa11.13□□□□□ -0.63
CD44-201ENST00000263398 GPATCH2LQ9NWQ4 482 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms