RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 UBR7Q8N806 425 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 RXFP2Q8WXD0 754 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 TTC25Q96NG3 672 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 APOL6Q9BWW8 343 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 SPATC1LQ9H0A9 340 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 HEY2Q9UBP5 337 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 ADAMTS5Q9UNA0 930 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 HES2Q9Y543 173 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 ZBTB42B2RXF5 422 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 PTPN11Q06124 597 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 MOGSQ13724 837 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 DPYSL3Q14195 570 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 KRT81Q14533 505 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 CDHR3Q6ZTQ4 885 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 UNC5BQ8IZJ1 945 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 NAT8LQ8N9F0 302 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 DTX3LQ8TDB6 740 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 TCRBV9S1A1TA0A576 114 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 CXorf49A8MYA2 514 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 PIGRP01833 764 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 ZNF286BP0CG31 522 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 STAG3L1P0CL83 205 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 YWHAEP62258 255 aaKnown RBP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 MCL1Q07820 350 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 MPZL3Q6UWV2 235 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 AGGF1Q8N302 714 aaeCLIP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 GBP7Q8N8V2 638 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 NKD2Q969F2 451 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 NOP53Q9NZM5 478 aaKnown RBP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 SHOC2Q9UQ13 582 aa22.27■■□□□ 1.16
TRIM28-201ENST00000253024 FARP1Q9Y4F1 1045 aaPredicted RBP22.27■■□□□ 1.16
TRIM28-201ENST00000253024 HMGCRP04035 888 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 PDHA1P08559 390 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 EIF4BP23588 611 aaKnown RBP22.26■■□□□ 1.15
TRIM28-201ENST00000253024 SERPINB3P29508 390 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 GRIA1P42261 906 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 RNF43Q68DV7 783 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 ZCCHC23Q6ZST2 131 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 FAM13CQ8NE31 585 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 C10orf82Q8WW14 230 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 L3MBTL3Q96JM7 780 aaPredicted RBP22.26■■□□□ 1.15
TRIM28-201ENST00000253024 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.26■■□□□ 1.155e-7■■□□□ 12.4
TRIM28-201ENST00000253024 SIGLEC16A6NMB1 481 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 C19orf81C9J6K1 198 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 RBL1P28749 1068 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 NDST1P52848 882 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 RSRC1Q96IZ7 334 aaKnown RBP22.26■■□□□ 1.15
TRIM28-201ENST00000253024 DDX56Q9NY93 547 aaKnown RBP22.26■■□□□ 1.15
TRIM28-201ENST00000253024 MRPL42Q9Y6G3 142 aaKnown RBP22.26■■□□□ 1.15
TRIM28-201ENST00000253024 FAM237BA0A1B0GVD1 139 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 INHBAP08476 426 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 ABHD2P08910 425 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 ALDH3A1P30838 453 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 METTL7BQ6UX53 244 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 MICAL1Q8TDZ2 1067 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 GPR20Q99678 358 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 TMEM134Q9H6X4 195 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 SLC24A3Q9HC58 644 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 SNCAIPQ9Y6H5 919 aa22.26■■□□□ 1.15
TRIM28-201ENST00000253024 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ABLIM1O14639 778 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 PPEF2O14830 753 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 TXNP10599 105 aaKnown RBP22.25■■□□□ 1.15
TRIM28-201ENST00000253024 RFC5P40937 340 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ZPBP2Q6X784 338 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ACOT1Q86TX2 421 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 CLEC4CQ8WTT0 213 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 NDRG1Q92597 394 aaKnown RBP22.25■■□□□ 1.15
TRIM28-201ENST00000253024 NUDCD1Q96RS6 583 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 MANSC1Q9H8J5 431 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 MFHAS1Q9Y4C4 1052 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 KRT7P08729 469 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ATP2A2P16615 1042 aaKnown RBP22.25■■□□□ 1.15
TRIM28-201ENST00000253024 CYP3A5P20815 502 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 PHBP35232 272 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ROR1Q01973 937 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 FAM183BPQ6ZVS7 135 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 SULF1Q8IWU6 871 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 CCHCR1Q8TD31 782 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 SLC7A6OSQ96CW6 309 aaPredicted RBP22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ACAP3Q96P50 834 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ARL8BQ9NVJ2 186 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 DRG1Q9Y295 367 aaKnown RBP22.25■■□□□ 1.15
TRIM28-201ENST00000253024 STARD13Q9Y3M8 1113 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 ARID2Q68CP9 1835 aa22.25■■□□□ 1.15
TRIM28-201ENST00000253024 USP2O75604 605 aaPredicted RBP22.24■■□□□ 1.15
TRIM28-201ENST00000253024 LSM8O95777 96 aaKnown RBP22.24■■□□□ 1.15
TRIM28-201ENST00000253024 OAZ1P54368 228 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 RCN2Q14257 317 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 ANKRD20A2Q5SQ80 823 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 ANKRD20A1Q5TYW2 823 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 ANKRD20A3Q5VUR7 823 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 APBB1IPQ7Z5R6 666 aaPredicted RBP22.24■■□□□ 1.15
TRIM28-201ENST00000253024 DCAKDQ8WVC6 231 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 TXLNGQ9NUQ3 528 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 KANSL3Q9P2N6 904 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 TRIM49D1C9J1S8 452 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 CCDC142Q17RM4 750 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 EFHC2Q5JST6 749 aa22.24■■□□□ 1.15
TRIM28-201ENST00000253024 MROH9Q5TGP6 573 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms