RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ABLIM1O14639 778 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 ATP9BO43861 1147 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 ALDH1A2O94788 518 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 FSBPO95073 299 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CYP3A4P08684 503 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 FNTAP49354 379 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 PSEN2P49810 448 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 ARFIP2P53365 341 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 ERVK-9P63128 1117 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 ERVK-24P63145 666 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 PPARDQ03181 441 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 MCL1Q07820 350 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CACNB2Q08289 660 aaPredicted RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 CEP78Q5JTW2 689 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 TMEM39AQ9NV64 488 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 PSMC3IPQ9P2W1 217 aaPredicted RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 ZC3H7BQ9UGR2 993 aaKnown RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 PRG3Q9Y2Y8 225 aaPredicted RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 TUFMP49411 452 aaKnown RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 MAP3K10Q02779 954 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 BST2Q10589 180 aaKnown RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 STK4Q13043 487 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 MRNIPQ6NTE8 343 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CLEC10AQ8IUN9 316 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CCDC126Q96EE4 140 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 OSBPL8Q9BZF1 889 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 STMN3Q9NZ72 180 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 ZFP69BQ9UJL9 534 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 RABL2BQ9UNT1 228 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CLCA2Q9UQC9 943 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 HNRNPCL2B2RXH8 293 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 WNT10BO00744 389 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 WBP4O75554 376 aaKnown RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 PARNO95453 639 aaKnown RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 NPTX2P47972 431 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 DEFA1P59665 94 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 DEFA3P59666 94 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 SLC7A5Q01650 507 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 VPS37AQ8NEZ2 397 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CPA5Q8WXQ8 436 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 SMARCAL1Q9NZC9 954 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CFLARO15519 480 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CYTH3O43739 400 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 CDH16O75309 829 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 ATP4AP20648 1035 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 EEF1B2P24534 225 aaKnown RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 NFIAQ12857 509 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 RBM12BQ8IXT5 1001 aaKnown RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 REPS2Q8NFH8 660 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 WDR18Q9BV38 432 aa13.23□□□□□ -0.29
USP40-201ENST00000251722 TTC7AQ9ULT0 858 aaPredicted RBP13.23□□□□□ -0.29
USP40-201ENST00000251722 GAKO14976 1311 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 CBFA2T3O75081 653 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 IRF1P10914 325 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SHMT1P34896 483 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 AVPR1AP37288 418 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SEC23AQ15436 765 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SZRD1Q7Z422 152 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 DSG4Q86SJ6 1040 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 HPS5Q9UPZ3 1129 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 TEX33O43247 280 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 DDNO94850 711 aaPredicted RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 CDH2P19022 906 aaPredicted RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 POLR2EP19388 210 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 GRB10Q13322 594 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 ZNF211Q13398 564 aaPredicted RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 DCTN2Q13561 401 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 STARD3Q14849 445 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 TRIM48Q8IWZ4 208 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 PPIL6Q8IXY8 311 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 TMEM199Q8N511 208 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 MKL1Q969V6 931 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 XPO6Q96QU8 1125 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 TRIM17Q9Y577 477 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 HEATR9A2RTY3 570 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 STX7O15400 261 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 FKTNO75072 461 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 RAB14P61106 215 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 LLGL1Q15334 1064 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 PKN3Q6P5Z2 889 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 FAM49BQ9NUQ9 324 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 MSRAQ9UJ68 235 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 CRLS1Q9UJA2 301 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 WDR91A4D1P6 747 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 XPO1O14980 1071 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 ZMYND10O75800 440 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SOAT2O75908 522 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 S100A9P06702 114 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 TWF1Q12792 350 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 MRPL28Q13084 256 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 CBX3Q13185 183 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 ACVR2BQ13705 512 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 TSHZ1Q6ZSZ6 1077 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SUN5Q8TC36 379 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 FAR2Q96K12 515 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 C5orf58C9J3I9 102 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SLC9A3R1O14745 358 aaPredicted RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 DDHD2O94830 711 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 HMBSP08397 361 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms