RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PCGF5Q86SE9 256 aa12.96□□□□□ -0.34
NUP88-201ENST00000225696 CHSY1Q86X52 802 aa12.96□□□□□ -0.34
NUP88-201ENST00000225696 PDIK1LQ8N165 341 aa12.96□□□□□ -0.34
NUP88-201ENST00000225696 SRPK1Q96SB4 655 aaKnown RBP12.96□□□□□ -0.34
NUP88-201ENST00000225696 CYTH2Q99418 400 aa12.96□□□□□ -0.34
NUP88-201ENST00000225696 WDR35Q9P2L0 1181 aa12.96□□□□□ -0.34
NUP88-201ENST00000225696 SLC9A2Q9UBY0 812 aa12.96□□□□□ -0.34
NUP88-201ENST00000225696 PGAP2Q9UHJ9 254 aa12.96□□□□□ -0.34
NUP88-201ENST00000225696 ARID2Q68CP9 1835 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 ADGRA2Q96PE1 1338 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 K7ERI5 159 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 TGDSO95455 350 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 ASS1P00966 412 aaKnown RBP12.95□□□□□ -0.34
NUP88-201ENST00000225696 ZCCHC18P0CG32 403 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 TBXAS1P24557 533 aaPredicted RBP12.95□□□□□ -0.34
NUP88-201ENST00000225696 ACTR2P61160 394 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 YWHAGP61981 247 aaKnown RBP eCLIP12.95□□□□□ -0.34
NUP88-201ENST00000225696 MRPS5P82675 430 aaKnown RBP12.95□□□□□ -0.34
NUP88-201ENST00000225696 ZNF200P98182 395 aaPredicted RBP12.95□□□□□ -0.34
NUP88-201ENST00000225696 ENPEPQ07075 957 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 BST1Q10588 318 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 KRT72Q14CN4 511 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 SH3PXD2AQ5TCZ1 1133 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 ZBTB33Q86T24 672 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 NIPA2Q8N8Q9 360 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 HSPH1Q92598 858 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 STMN2Q93045 179 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 ATP6V0A1Q93050 837 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 ALKBH8Q96BT7 664 aaKnown RBP12.95□□□□□ -0.34
NUP88-201ENST00000225696 ACAP3Q96P50 834 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 PANX3Q96QZ0 392 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 DDX56Q9NY93 547 aaKnown RBP12.95□□□□□ -0.34
NUP88-201ENST00000225696 TEX264Q9Y6I9 313 aa12.95□□□□□ -0.34
NUP88-201ENST00000225696 TRIM49D1C9J1S8 452 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 LGR5O75473 907 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 SNUPNO95149 360 aaKnown RBP12.94□□□□□ -0.34
NUP88-201ENST00000225696 MAP3K6O95382 1288 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 ASNSP08243 561 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 RBP3P10745 1247 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 SKIP12755 728 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 POLE2P56282 527 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 RTP1P59025 263 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 EIF3EP60228 445 aaKnown RBP12.94□□□□□ -0.34
NUP88-201ENST00000225696 TGFB2P61812 414 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 BMPR2Q13873 1038 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 FAXCQ5TGI0 409 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 CCDC62Q6P9F0 684 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 ABHD15Q6UXT9 468 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 ARID3BQ8IVW6 561 aaPredicted RBP12.94□□□□□ -0.34
NUP88-201ENST00000225696 GALNT15Q8N3T1 639 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 TMEM35BQ8NCS4 154 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 CFAP36Q96G28 342 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 SLC13A1Q9BZW2 595 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 SMYD2Q9NRG4 433 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.94□□□□□ -0.34
NUP88-201ENST00000225696 SCOCQ9UIL1 159 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 PLA2G4CQ9UP65 541 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 H0YIN7 160 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 ATG7O95352 703 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 KRT3P12035 628 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 RAP1GAPP47736 663 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 RSBN1LQ6PCB5 846 aaPredicted RBP12.94□□□□□ -0.34
NUP88-201ENST00000225696 RIPOR1Q6ZS17 1223 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 RFX6Q8HWS3 928 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 PPM1NQ8N819 430 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 SPATA18Q8TC71 538 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 ATG4CQ96DT6 458 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 CPXM1Q96SM3 734 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 GMLQ99445 158 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 ZNF184Q99676 751 aaPredicted RBP12.94□□□□□ -0.34
NUP88-201ENST00000225696 EBF4Q9BQW3 602 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 IMPG2Q9BZV3 1241 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 JPH1Q9HDC5 661 aaPredicted RBP12.94□□□□□ -0.34
NUP88-201ENST00000225696 PPARGC1AQ9UBK2 798 aaKnown RBP12.94□□□□□ -0.34
NUP88-201ENST00000225696 PPM1HQ9ULR3 514 aa12.94□□□□□ -0.34
NUP88-201ENST00000225696 IQANK1A0A1B0GTG1 560 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 MEI4A8MW99 385 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 TBC1D12O60347 775 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 STAM2O75886 525 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 SORBS2O94875 1100 aaKnown RBP12.93□□□□□ -0.34
NUP88-201ENST00000225696 PSAPP07602 524 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 INHBAP08476 426 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 FSTL1Q12841 308 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 UBAP2LQ14157 1087 aaKnown RBP12.93□□□□□ -0.34
NUP88-201ENST00000225696 TAZQ16635 292 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 AP1ARQ63HQ0 302 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 ZCCHC23Q6ZST2 131 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 POLNQ7Z5Q5 900 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 CTAGE3PQ8IX95 158 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 AKT1S1Q96B36 256 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 PEBP4Q96S96 227 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 TTC1Q99614 292 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 THTPAQ9BU02 230 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 CALN1Q9BXU9 219 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 PHACTR1Q9C0D0 580 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 MMADHCQ9H3L0 296 aaPredicted RBP12.93□□□□□ -0.34
NUP88-201ENST00000225696 SLC7A8Q9UHI5 535 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 TTLL3Q9Y4R7 772 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 PRR5-ARHGAP8B1AHC4 643 aa12.93□□□□□ -0.34
NUP88-201ENST00000225696 WDR46O15213 610 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms