RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	MRPL28	P36527	147 aa		3.07	□□□□□ -1.92
RRP40	YOL142W	YHR140W	P38842	239 aa		3.07	□□□□□ -1.92
RRP40	YOL142W	GTT1	P40582	234 aa		3.07	□□□□□ -1.92
RRP40	YOL142W	YLR042C	Q07990	161 aa		3.07	□□□□□ -1.92
RRP40	YOL142W	FSF1	Q12029	327 aa	Known RBP	3.07	□□□□□ -1.92
RRP40	YOL142W	POR1	P04840	283 aa	Known RBP	3.06	□□□□□ -1.92
RRP40	YOL142W	SEC4	P07560	215 aa	Known RBP	3.06	□□□□□ -1.92
RRP40	YOL142W	YNL217W	P40152	326 aa		3.06	□□□□□ -1.92
RRP40	YOL142W	DXO1	Q06349	442 aa		3.06	□□□□□ -1.92
RRP40	YOL142W	ZEO1	Q08245	113 aa		3.06	□□□□□ -1.92
RRP40	YOL142W	YGR240C-A	Q3E786	66 aa		3.06	□□□□□ -1.92
RRP40	YOL142W	RPS22B	Q3E7Y3	130 aa	Known RBP	3.06	□□□□□ -1.92
RRP40	YOL142W	YCR075W-A	Q3E830	75 aa		3.06	□□□□□ -1.92
RRP40	YOL142W	IRC22	P40006	225 aa		3.05	□□□□□ -1.92
RRP40	YOL142W	POM33	Q12164	279 aa		3.05	□□□□□ -1.92
RRP40	YOL142W	UBC5	P15732	148 aa		3.04	□□□□□ -1.92
RRP40	YOL142W	SUR2	P38992	349 aa		3.04	□□□□□ -1.92
RRP40	YOL142W	MGR2	Q02889	113 aa		3.04	□□□□□ -1.92
RRP40	YOL142W	YML108W	Q03759	105 aa		3.04	□□□□□ -1.92
RRP40	YOL142W	DGA1	Q08650	418 aa		3.04	□□□□□ -1.92
RRP40	YOL142W	EDC2	P40023	145 aa	Predicted RBP	3.03	□□□□□ -1.92
RRP40	YOL142W	CDC40	P40968	455 aa	Predicted RBP	3.03	□□□□□ -1.92
RRP40	YOL142W	TIM11	P81449	96 aa	Predicted RBP	3.03	□□□□□ -1.92
RRP40	YOL142W	CYT2	Q00873	224 aa		3.03	□□□□□ -1.92
RRP40	YOL142W	YPL080C	Q02826	108 aa		3.03	□□□□□ -1.92
RRP40	YOL142W	TVP18	Q04767	167 aa		3.03	□□□□□ -1.92
RRP40	YOL142W	YER076C	P40049	302 aa		3.02	□□□□□ -1.93
RRP40	YOL142W	YNL200C	P40165	246 aa	Known RBP	3.02	□□□□□ -1.93
RRP40	YOL142W	YLL066W-B	Q8TGJ7	56 aa		3.02	□□□□□ -1.93
RRP40	YOL142W	PFY1	P07274	126 aa		3.01	□□□□□ -1.93
RRP40	YOL142W	MRP49	P32388	137 aa		3.01	□□□□□ -1.93
RRP40	YOL142W	GSP1	P32835	219 aa	Known RBP	3.01	□□□□□ -1.93
RRP40	YOL142W	GSP2	P32836	220 aa	Known RBP	3.01	□□□□□ -1.93
RRP40	YOL142W	TEM1	P38987	245 aa		3.01	□□□□□ -1.93
RRP40	YOL142W	DCV1	P43595	202 aa		3.01	□□□□□ -1.93
RRP40	YOL142W	YIL014C-A	Q02598	104 aa		3.01	□□□□□ -1.93
RRP40	YOL142W	FCF1	Q05498	189 aa	Predicted RBP	3.01	□□□□□ -1.93
RRP40	YOL142W	DPP1	Q05521	289 aa		3.01	□□□□□ -1.93
RRP40	YOL142W	YMR122W-A	Q3E842	84 aa		3.01	□□□□□ -1.93
RRP40	YOL142W	PRE1	P22141	198 aa	Known RBP	3	□□□□□ -1.93
RRP40	YOL142W	SPC1	P46965	94 aa		3	□□□□□ -1.93
RRP40	YOL142W	TOS6	P48560	102 aa		3	□□□□□ -1.93
RRP40	YOL142W	YGL088W	P53151	121 aa		3	□□□□□ -1.93
RRP40	YOL142W	PMP3	P87284	55 aa		3	□□□□□ -1.93
RRP40	YOL142W	RPL33A	P05744	107 aa	Known RBP	2.99	□□□□□ -1.93
RRP40	YOL142W	YKR070W	P36151	352 aa	Known RBP	2.99	□□□□□ -1.93
RRP40	YOL142W	AIM29	P36154	155 aa		2.99	□□□□□ -1.93
RRP40	YOL142W	ARC15	P40518	154 aa	RIP-Chip data	2.99	□□□□□ -1.93	not detected
RRP40	YOL142W	RPL33B	P41056	107 aa	Known RBP	2.99	□□□□□ -1.93
RRP40	YOL142W	YJR146W	P47174	117 aa		2.99	□□□□□ -1.93
RRP40	YOL142W	ERI1	P62651	68 aa	Known RBP	2.99	□□□□□ -1.93
RRP40	YOL142W	ARL3	Q02804	198 aa		2.99	□□□□□ -1.93
RRP40	YOL142W	WIP1	Q2V2P8	89 aa		2.99	□□□□□ -1.93
RRP40	YOL142W	SEC72	P39742	193 aa	Known RBP	2.98	□□□□□ -1.93
RRP40	YOL142W	YER134C	P40081	178 aa		2.98	□□□□□ -1.93
RRP40	YOL142W	YDR042C	Q03205	200 aa		2.98	□□□□□ -1.93
RRP40	YOL142W	YPR014C	Q6B0W2	109 aa		2.98	□□□□□ -1.93
RRP40	YOL142W	YJL028W	P47062	111 aa		2.97	□□□□□ -1.93
RRP40	YOL142W	COA3	Q3E7B2	85 aa		2.97	□□□□□ -1.93
RRP40	YOL142W	YBR209W	P38311	105 aa		2.96	□□□□□ -1.94
RRP40	YOL142W	OST3	P48439	350 aa		2.96	□□□□□ -1.94
RRP40	YOL142W	CUE4	Q04201	117 aa	Predicted RBP	2.96	□□□□□ -1.94
RRP40	YOL142W	YMR320W	Q04897	101 aa		2.96	□□□□□ -1.94
RRP40	YOL142W	YAL063C-A	Q3E791	96 aa		2.96	□□□□□ -1.94
RRP40	YOL142W	RTC6	O14464	93 aa		2.95	□□□□□ -1.94
RRP40	YOL142W	HMRA2	P0CY13	119 aa		2.95	□□□□□ -1.94
RRP40	YOL142W	YBR219C	P38317	127 aa		2.95	□□□□□ -1.94
RRP40	YOL142W	YEL008W	P40001	126 aa		2.95	□□□□□ -1.94
RRP40	YOL142W	POP3	P53833	195 aa	Predicted RBP	2.95	□□□□□ -1.94
RRP40	YOL142W	SEN15	Q04675	128 aa		2.95	□□□□□ -1.94
RRP40	YOL142W	YOR008C-A	Q3E7B9	74 aa		2.95	□□□□□ -1.94
RRP40	YOL142W	YPR010C-A	A5Z2X5	72 aa		2.94	□□□□□ -1.94
RRP40	YOL142W	RPL27B	P0C2H7	136 aa	Known RBP	2.94	□□□□□ -1.94
RRP40	YOL142W	KRE1	P17260	313 aa		2.94	□□□□□ -1.94
RRP40	YOL142W	SSS1	P35179	80 aa		2.94	□□□□□ -1.94
RRP40	YOL142W	ERG28	P40030	148 aa		2.94	□□□□□ -1.94
RRP40	YOL142W	ERV14	P53173	138 aa		2.94	□□□□□ -1.94
RRP40	YOL142W	CMC2	Q3E7A4	109 aa		2.94	□□□□□ -1.94
RRP40	YOL142W	RRT15	Q3E811	62 aa		2.94	□□□□□ -1.94
RRP40	YOL142W	PAU16	P35994	123 aa		2.93	□□□□□ -1.94
RRP40	YOL142W	PKR1	Q03880	122 aa	Known RBP	2.93	□□□□□ -1.94
RRP40	YOL142W	YIL134C-A	Q45U18	67 aa		2.93	□□□□□ -1.94
RRP40	YOL142W	YPL229W	Q99395	206 aa		2.93	□□□□□ -1.94
RRP40	YOL142W	YKL070W	P36087	169 aa		2.92	□□□□□ -1.94
RRP40	YOL142W	YBL081W	P38180	368 aa	Known RBP	2.92	□□□□□ -1.94
RRP40	YOL142W	FYV4	P38783	130 aa	Predicted RBP	2.92	□□□□□ -1.94
RRP40	YOL142W	SVP26	P38869	228 aa		2.92	□□□□□ -1.94
RRP40	YOL142W	YAR029W	P39549	74 aa		2.92	□□□□□ -1.94
RRP40	YOL142W	YER085C	P40058	173 aa		2.92	□□□□□ -1.94
RRP40	YOL142W	YMR103C	Q04436	120 aa		2.92	□□□□□ -1.94
RRP40	YOL142W	YLR194C	Q05777	254 aa		2.92	□□□□□ -1.94
RRP40	YOL142W	HTL1	Q9URQ5	78 aa		2.92	□□□□□ -1.94
RRP40	YOL142W	RPL31A	P0C2H8	113 aa	Known RBP	2.91	□□□□□ -1.94
RRP40	YOL142W	YDL022C-A	P0C5L6	82 aa		2.91	□□□□□ -1.94
RRP40	YOL142W	RPC10	P40422	70 aa		2.91	□□□□□ -1.94
RRP40	YOL142W	GAT4	P40569	121 aa		2.91	□□□□□ -1.94
RRP40	YOL142W	YMR295C	Q03559	197 aa		2.91	□□□□□ -1.94
RRP40	YOL142W	ENV10	Q99382	181 aa		2.91	□□□□□ -1.94
RRP40	YOL142W	ANB1	P19211	157 aa		2.9	□□□□□ -1.95
RRP40	YOL142W	ATP15	P21306	62 aa		2.9	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms