RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 GDF6Q6KF10 455 aaPredicted RBP12.1□□□□□ -0.47
CLN6-217ENST00000636964 MAATS1Q7Z4T9 603 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 SLC13A5Q86YT5 568 aaPredicted RBP12.1□□□□□ -0.47
CLN6-217ENST00000636964 CCDC50Q8IVM0 306 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 HERPUD2Q9BSE4 406 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 NACA2Q9H009 215 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 M0QYV0 167 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 UPP2O95045 317 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 RARAP10276 462 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 GNAT1P11488 350 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 ZNF24P17028 368 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 DRD4P21917 467 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 HSPA9P38646 679 aaKnown RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 CRYBB1P53674 252 aaPredicted RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 POU5F1Q01860 360 aaKnown RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 OGDHQ02218 1023 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 PAK2Q13177 524 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 TTC27Q6P3X3 843 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 C1orf54Q8WWF1 131 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 ACSF2Q96CM8 615 aaPredicted RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 CPXM1Q96SM3 734 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 MRPL45Q9BRJ2 306 aaKnown RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 SYNCQ9H7C4 482 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 RNF186Q9NXI6 227 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 PCDHGC3Q9UN70 934 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLN6-217ENST00000636964 PTPN22Q9Y2R2 807 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 SCINQ9Y6U3 715 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 SH3BP5O60239 455 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 MICAL2O94851 1124 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 LSM8O95777 96 aaKnown RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 CALB1P05937 261 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 GJA8P48165 433 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 DR1Q01658 176 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 UBXN11Q5T124 520 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 ARRDC4Q8NCT1 418 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 SMC1BQ8NDV3 1235 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 FAM118BQ9BPY3 351 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 MTG1Q9BT17 334 aaPredicted RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 SLITRK6Q9H5Y7 841 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 BAIAP2L1Q9UHR4 511 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 SMIM28A0A1B0GU29 152 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 TMEM191CA6NGB0 347 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 ENO4A6NNW6 628 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 MEIS3P2A8K0S8 358 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 PI4K2BG5E9Z4 385 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 MED7O43513 233 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 SMNDC1O75940 238 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLN6-217ENST00000636964 RARBP10826 455 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 SLC8A1P32418 973 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 GJA9P57773 515 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 ZNF252P-AS1Q0IIN9 211 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 HIBCHQ6NVY1 386 aaPredicted RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 ACOT1Q86TX2 421 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 EMC1Q8N766 993 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 RNF25Q96BH1 459 aaPredicted RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 DDX27Q96GQ7 796 aaKnown RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 PLEKHA5Q9HAU0 1116 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 CACNG4Q9UBN1 327 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 BARX2Q9UMQ3 279 aaPredicted RBP12.09□□□□□ -0.47
CLN6-217ENST00000636964 C15orf41Q9Y2V0 281 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 CDY2AQ9Y6F7 541 aa12.09□□□□□ -0.47
CLN6-217ENST00000636964 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.08□□□□□ -0.48
CLN6-217ENST00000636964 ANP32DO95626 131 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 PAEPP09466 180 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 SLC1A1P43005 524 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 PSMC1P62191 440 aaKnown RBP12.08□□□□□ -0.48
CLN6-217ENST00000636964 ZBTB6Q15916 424 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 BEST2Q8NFU1 509 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 ATG4AQ8WYN0 398 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 AGAP3Q96P47 875 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 VRTNQ9H8Y1 702 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 CYP3A43Q9HB55 503 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 FAM49BQ9NUQ9 324 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 IPPQ9Y573 584 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 ASGR1P07306 291 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 CYP3A5P20815 502 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 RFC1P35251 1148 aaPredicted RBP12.08□□□□□ -0.48
CLN6-217ENST00000636964 SOX4Q06945 474 aaPredicted RBP12.08□□□□□ -0.48
CLN6-217ENST00000636964 TXNRD3NBQ6F5E7 133 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 CCDC137Q6PK04 289 aaKnown RBP12.08□□□□□ -0.48
CLN6-217ENST00000636964 ALKAL1Q6UXT8 129 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 ANKS1BQ7Z6G8 1248 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 JOSD2Q8TAC2 188 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 ZFP42Q96MM3 310 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 PHACTR1Q9C0D0 580 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 ZNF518BQ9C0D4 1074 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 SPC25Q9HBM1 224 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 XPNPEP3Q9NQH7 507 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 GTF2IRD1Q9UHL9 959 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 UTP11Q9Y3A2 253 aaKnown RBP12.08□□□□□ -0.48
CLN6-217ENST00000636964 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLN6-217ENST00000636964 TCRBV5S1A1TA0A578 114 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 SEPT4O43236 478 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 MAP3K13O43283 966 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 ERBB2P04626 1255 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 PDGFRBP09619 1106 aa12.08□□□□□ -0.48
CLN6-217ENST00000636964 PRKAR2AP13861 404 aaKnown RBP12.08□□□□□ -0.48
CLN6-217ENST00000636964 IGFBP6P24592 240 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms