RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 OR6B3Q8NGW1 331 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 TMEM174Q8WUU8 243 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 SCFD1Q8WVM8 642 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 GAB3Q8WWW8 586 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 CD101Q93033 1021 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 CCDC127Q96BQ5 260 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 PCED1BQ96HM7 432 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 SLITRK1Q96PX8 696 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 VRTNQ9H8Y1 702 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 GCNT4Q9P109 453 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 ATG2BQ96BY7 2078 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 PHACTR2O75167 634 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 RTN3O95197 1032 aaPredicted RBP12.7□□□□□ -0.38
UPF3B-204ENST00000619445 KIF20AO95235 890 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 PDGFRBP09619 1106 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 SLFN14P0C7P3 912 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 BDNFP23560 247 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 LMO2P25791 158 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 PSMC1P62191 440 aaKnown RBP12.7□□□□□ -0.38
UPF3B-204ENST00000619445 SPEM2Q0P670 501 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 WDR44Q5JSH3 913 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 TDRD10Q5VZ19 366 aaKnown RBP12.7□□□□□ -0.38
UPF3B-204ENST00000619445 RESP18Q5W5W9 173 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 HEATR6Q6AI08 1181 aaKnown RBP12.7□□□□□ -0.38
UPF3B-204ENST00000619445 TRIM68Q6AZZ1 485 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 C11orf74Q86VG3 221 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 RDH13Q8NBN7 331 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 GLIS3Q8NEA6 775 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 SH3RF2Q8TEC5 729 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 OVCA2Q8WZ82 227 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 HPS3Q969F9 1004 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 TNIP3Q96KP6 325 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 CRTAC1Q9NQ79 661 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 SEMA4GQ9NTN9 838 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 PCDHGA5Q9Y5G8 931 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 ACACBO00763 2458 aa12.7□□□□□ -0.38
UPF3B-204ENST00000619445 A8MXQ7 604 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 RNF40O75150 1001 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 ATP2C2O75185 946 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 RPP40O75818 363 aaKnown RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 CCDC192P0DO97 292 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 ARSAP15289 507 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 PTPN1P18031 435 aaKnown RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 GALK1P51570 392 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 ATXN1P54253 815 aaKnown RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 SLC7A9P82251 487 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 LPAL2Q16609 132 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 EML3Q32P44 896 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 MDH1BQ5I0G3 518 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 SYT13Q7L8C5 426 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 SLC9A9Q8IVB4 645 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 NELFCDQ8IXH7 590 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 ARL14EPQ8N8R7 260 aaPredicted RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 B3GALNT2Q8NCR0 500 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 STKLD1Q8NE28 680 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 CYP2S1Q96SQ9 504 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 DNAI2Q9GZS0 605 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 PARD6AQ9NPB6 346 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 EXOC1Q9NV70 894 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 PCDHA7Q9UN72 937 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 DNAH14Q0VDD8 3507 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 ZNF840PA6NDX5 716 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 OTOL1A6NHN0 477 aaPredicted RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 F8VP50 259 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 SLC30A4O14863 429 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 CLIC2O15247 247 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 APBB3O95704 486 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 CST3P01034 146 aaPredicted RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 EGFP01133 1207 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 RPN1P04843 607 aaKnown RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 EIF2DP41214 584 aaKnown RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 CLDN10P78369 228 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 DMWDQ09019 674 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 BIRC3Q13489 604 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 PREPLQ4J6C6 727 aaPredicted RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 ZNF667Q5HYK9 610 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 PRR23CQ6ZRP0 262 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 FAM160A2Q8N612 972 aaPredicted RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 TAF4BQ92750 862 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 CCDC47Q96A33 483 aaKnown RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 OTUB2Q96DC9 234 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 ZC3H10Q96K80 434 aaKnown RBP12.69□□□□□ -0.38
UPF3B-204ENST00000619445 SLC39A2Q9NP94 309 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 COMMD8Q9NX08 183 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 TBC1D14Q9P2M4 693 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 EBF1Q9UH73 591 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 RCOR1Q9UKL0 485 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 WNT6Q9Y6F9 365 aa12.69□□□□□ -0.38
UPF3B-204ENST00000619445 EPG5Q9HCE0 2579 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 MED19A0JLT2 244 aaPredicted RBP12.68□□□□□ -0.38
UPF3B-204ENST00000619445 C2orf78A6NCI8 922 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 PDXKO00764 312 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 AXIN1O15169 862 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 HCRTO43612 131 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 OLFM2O95897 454 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 YWHAQP27348 245 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 AFMP43652 599 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 ELF2Q15723 593 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 ZNF699Q32M78 642 aa12.68□□□□□ -0.38
UPF3B-204ENST00000619445 HSF5Q4G112 596 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms