RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 SMYD4Q8IYR2 804 aaPredicted RBP27.72■■■□□ 2.03
PNKP-216ENST00000601816 RIN3Q8TB24 985 aa27.72■■■□□ 2.03
PNKP-216ENST00000601816 SLC22A12Q96S37 553 aa27.72■■■□□ 2.03
PNKP-216ENST00000601816 CYP2S1Q96SQ9 504 aa27.72■■■□□ 2.03
PNKP-216ENST00000601816 TRPM5Q9NZQ8 1165 aa27.72■■■□□ 2.03
PNKP-216ENST00000601816 GCNT4Q9P109 453 aa27.72■■■□□ 2.03
PNKP-216ENST00000601816 VPS13AQ96RL7 3174 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 C2orf78A6NCI8 922 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 ASS1P00966 412 aaKnown RBP27.71■■■□□ 2.03
PNKP-216ENST00000601816 LMNAP02545 664 aaKnown RBP27.71■■■□□ 2.03
PNKP-216ENST00000601816 TRIM49P0CI25 452 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 TRIM49CP0CI26 452 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 PDE6CP51160 858 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 CACNA2D1P54289 1103 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 ENPEPQ07075 957 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 RUNX3Q13761 415 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 MTF1Q14872 753 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 TRIM68Q6AZZ1 485 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 ARL14EPQ8N8R7 260 aaPredicted RBP27.71■■■□□ 2.03
PNKP-216ENST00000601816 MED10Q9BTT4 135 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 IMPG2Q9BZV3 1241 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 EBF3Q9H4W6 596 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 HPS4Q9NQG7 708 aa27.71■■■□□ 2.03
PNKP-216ENST00000601816 ZNF638Q14966 1978 aaKnown RBP27.7■■■□□ 2.03
PNKP-216ENST00000601816 HDCP19113 662 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 GCLMP48507 274 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 USP4Q13107 963 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 PON2Q15165 354 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 PDGFRLQ15198 375 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 EDRF1Q3B7T1 1238 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 DGKKQ5KSL6 1271 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 SPOPLQ6IQ16 392 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 TSSK4Q6SA08 328 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 MAMSTRQ6ZN01 415 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 FAM35AQ86V20 835 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 ADSSL1Q8N142 457 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 TTC16Q8NEE8 873 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 RBM12Q9NTZ6 932 aaKnown RBP27.7■■■□□ 2.02
PNKP-216ENST00000601816 TMEM30AQ9NV96 361 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 PCDHGA2Q9Y5H1 932 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 GREB1Q4ZG55 1949 aa27.7■■■□□ 2.02
PNKP-216ENST00000601816 KINO60870 393 aaKnown RBP27.69■■■□□ 2.02
PNKP-216ENST00000601816 PFKLP17858 780 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 PPP3CCP48454 512 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 CCR3P51677 355 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 PPP3CAQ08209 521 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 PPP2R5DQ14738 602 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 ZNF77Q15935 545 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 ACOT1Q86TX2 421 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 ENGASEQ8NFI3 743 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 MMRN2Q9H8L6 949 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 ZSCAN32Q9NX65 697 aa27.69■■■□□ 2.02
PNKP-216ENST00000601816 SMC2O95347 1197 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 ARSAP15289 507 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 ASPAP45381 313 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 NUP93Q8N1F7 819 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 SH3RF2Q8TEC5 729 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 ATRIPQ8WXE1 791 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 SLITRK1Q96PX8 696 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 GSDMAQ96QA5 445 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 UTP3Q9NQZ2 479 aaKnown RBP eCLIP27.68■■■□□ 2.02
PNKP-216ENST00000601816 HOOK1Q9UJC3 728 aaKnown RBP27.68■■■□□ 2.02
PNKP-216ENST00000601816 ARHGAP26Q9UNA1 814 aa27.68■■■□□ 2.02
PNKP-216ENST00000601816 ZNF840PA6NDX5 716 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 NDST1P52848 882 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 IFRD2Q12894 506 aaPredicted RBP27.67■■■□□ 2.02
PNKP-216ENST00000601816 TAF10Q12962 218 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 WDR44Q5JSH3 913 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 ZNF658Q5TYW1 1059 aaPredicted RBP27.67■■■□□ 2.02
PNKP-216ENST00000601816 UNC93AQ86WB7 457 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 TAS1R2Q8TE23 839 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 SMARCD1Q96GM5 515 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 FAM126AQ9BYI3 521 aaPredicted RBP27.67■■■□□ 2.02
PNKP-216ENST00000601816 TMEM8AQ9HCN3 771 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 DMAP1Q9NPF5 467 aaPredicted RBP27.67■■■□□ 2.02
PNKP-216ENST00000601816 DUS2Q9NX74 493 aaKnown RBP27.67■■■□□ 2.02
PNKP-216ENST00000601816 FANCMQ8IYD8 2048 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 ANAPC1Q9H1A4 1944 aa27.67■■■□□ 2.02
PNKP-216ENST00000601816 CETN3O15182 167 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 RTN3O95197 1032 aaPredicted RBP27.66■■■□□ 2.02
PNKP-216ENST00000601816 ABL1P00519 1130 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 TCF3P15923 654 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 PRCPP42785 496 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 IFNAR2P48551 515 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 AMPD2Q01433 879 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 ORC1Q13415 861 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 GAS6Q14393 721 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 PAQR9Q6ZVX9 377 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 SPEM1Q8N4L4 309 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 CPA6Q8N4T0 437 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 ZBTB44Q8NCP5 570 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 CCDC150Q8NCX0 1101 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 OSCP1Q8WVF1 389 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 NELL1Q92832 810 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 SMARCE1Q969G3 411 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 TIGD1Q96MW7 591 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 HMGXB4Q9UGU5 601 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 WNT6Q9Y6F9 365 aa27.66■■■□□ 2.02
PNKP-216ENST00000601816 DMDP11532 3685 aa27.65■■■□□ 2.02
PNKP-216ENST00000601816 OTOL1A6NHN0 477 aaPredicted RBP27.65■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms