RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ANO7Q6IWH7 933 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 DPH6Q7L8W6 267 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 DYMQ7RTS9 669 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 C11orf74Q86VG3 221 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 C12orf40Q86WS4 652 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 SFR1Q86XK3 245 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 PHTF2Q8N3S3 785 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 CSGALNACT2Q8N6G5 542 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 TOP6BLQ8N6T0 577 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 IL17RCQ8NAC3 791 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 DEFB124Q8NES8 71 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 TSTD1Q8NFU3 115 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 RLN3Q8WXF3 142 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 POMGNT1Q8WZA1 660 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 LARP4BQ92615 738 aaKnown RBP6.55□□□□□ -1.36
VRK3-220ENST00000600259 PIGKQ92643 395 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 EXOC4Q96A65 974 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 HVCN1Q96D96 273 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 EPSTI1Q96J88 318 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 ZNF560Q96MR9 790 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 FAM213AQ9BRX8 229 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 FGFBP2Q9BYJ0 223 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 ZHX3Q9H4I2 956 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 PDE11AQ9HCR9 933 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 CD248Q9HCU0 757 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 TRPC7Q9HCX4 862 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 TMEM30AQ9NV96 361 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 FARP1Q9Y4F1 1045 aaPredicted RBP6.55□□□□□ -1.36
VRK3-220ENST00000600259 ANK1P16157 1881 aa6.55□□□□□ -1.36
VRK3-220ENST00000600259 PTPRJQ12913 1337 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 FRMD3A2A2Y4 597 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 GOLGA8IPA6NC78 632 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 TMEM8BA6NDV4 472 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 GOLGA8JA6NMD2 632 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 EIF5BO60841 1220 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 CD2BP2O95400 341 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 NFATC1O95644 943 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 OAS1P00973 400 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 CST3P01034 146 aaPredicted RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 CKMP06732 381 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 GARTP22102 1010 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 BDNFP23560 247 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 GJB2P29033 226 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 PCSK1P29120 753 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 DHPSP49366 369 aaPredicted RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 CACNA2D1P54289 1103 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 SEC13P55735 322 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 FAM193AP78312 1265 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 RBP5P82980 135 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 MYL7Q01449 175 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 SF3A1Q15459 793 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 TRIM61Q5EBN2 209 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 SPDYCQ5MJ68 293 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 L1TD1Q5T7N2 865 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 SLC23A3Q6PIS1 610 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 LRSAM1Q6UWE0 723 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 VSTM1Q6UX27 236 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 CYP2U1Q7Z449 544 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 FILIP1Q7Z7B0 1213 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 SPATA2LQ8IUW3 424 aaPredicted RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 SYT12Q8IV01 421 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 SCN4BQ8IWT1 228 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 TMEFF1Q8IYR6 380 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 ADGRF2Q8IZF7 708 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 ALLCQ8N6M5 410 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 TXNDC5Q8NBS9 432 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 OR5B17Q8NGF7 314 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 CCDC26Q8TAB7 109 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 CACTINQ8WUQ7 758 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 SAAL1Q96ER3 474 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 TMX3Q96JJ7 454 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 ZFRQ96KR1 1074 aaKnown RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 CEP295NLQ96MC4 621 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 ACCSQ96QU6 501 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 CBWD1Q9BRT8 395 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 INTS13Q9NVM9 706 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 PPP4R2Q9NY27 417 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 MAGEC2Q9UBF1 373 aaPredicted RBP6.54□□□□□ -1.36
VRK3-220ENST00000600259 SEL1LQ9UBV2 794 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 PILRBQ9UKJ0 227 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 ITGA11Q9UKX5 1188 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 MSRB2Q9Y3D2 182 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 NEUROG3Q9Y4Z2 214 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 SNX9Q9Y5X1 595 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 LAMA5O15230 3695 aa6.54□□□□□ -1.36
VRK3-220ENST00000600259 FREM2Q5SZK8 3169 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 MYH11P35749 1972 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 IGSF10Q6WRI0 2623 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 SPAARA0A1B0GVQ0 90 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 HYAL3O43820 417 aaPredicted RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 TBCAO75347 108 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 KAT7O95251 611 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 KLF8O95600 359 aaPredicted RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 LDHAP00338 332 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 KRT18P05783 430 aaKnown RBP6.53□□□□□ -1.36
VRK3-220ENST00000600259 PDGFRBP09619 1106 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 FAM163BP0C2L3 166 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 CD59P13987 128 aa6.53□□□□□ -1.36
VRK3-220ENST00000600259 ENGP17813 658 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms