RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 FSCN3Q9NQT6 498 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 VPS45Q9NRW7 570 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 SMPD4Q9NXE4 827 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 GCNT4Q9P109 453 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 SIX4Q9UIU6 781 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 CLIC4Q9Y696 253 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 PTPRDP23468 1912 aa9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 HELZP42694 1942 aaKnown RBP9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 ATXN2Q99700 1313 aaKnown RBP9.28□□□□□ -0.92
SHKBP1-220ENST00000599716 TRAV19A0A0A6YYK7 116 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 BCLAF3A2AJT9 711 aaKnown RBP9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 HUS1O60921 280 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 ATG13O75143 517 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 PPP1R37O75864 691 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 GCNT3O95395 438 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 APBB3O95704 486 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 PDGFRBP09619 1106 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 CSH1P0DML2 217 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 CSH2P0DML3 217 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 DRD1P21728 446 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 OPRD1P41143 372 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 SLC6A11P48066 632 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 CEBPZQ03701 1054 aaKnown RBP9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 FAM160A1Q05DH4 1040 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 PDGFRLQ15198 375 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 PTPAQ15257 358 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 SOWAHAQ2M3V2 549 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 GAB4Q2WGN9 574 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 UAP1L1Q3KQV9 507 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 EMC10Q5UCC4 262 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 SLFN12LQ6IEE8 588 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEM92Q6UXU6 159 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 SYT13Q7L8C5 426 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 C12orf40Q86WS4 652 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 SPATA2LQ8IUW3 424 aaPredicted RBP9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 BRSK2Q8IWQ3 736 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 ADGRF2Q8IZF7 708 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 KRI1Q8N9T8 703 aaKnown RBP9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 TSTD1Q8NFU3 115 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 OR5B17Q8NGF7 314 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 C2orf15Q8WU43 125 aaKnown RBP9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 MYLPFQ96A32 169 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 ELMO3Q96BJ8 720 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 DNAJC19Q96DA6 116 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 LOXL4Q96JB6 756 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 ZC3H10Q96K80 434 aaKnown RBP9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 ZNF560Q96MR9 790 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 DCBLD2Q96PD2 775 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 TSPAN18Q96SJ8 248 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 KIF9Q9HAQ2 790 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 RBAKQ9NYW8 714 aaPredicted RBP9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 NME7Q9Y5B8 376 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 CREBBPQ92793 2442 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 ADAMTS9Q9P2N4 1935 aa9.27□□□□□ -0.93
SHKBP1-220ENST00000599716 C2CD3Q4AC94 2353 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 A0A087X0B3 334 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 CCDC163A0A0D9SF12 145 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 VPS37CA5D8V6 355 aaPredicted RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 K7EQS6 105 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 PRPF6O94906 941 aaKnown RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 IL18RAPO95256 599 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 ABL1P00519 1130 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 USP17L7P0C7H9 530 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 IDEP14735 1019 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 HDCP19113 662 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 BDNFP23560 247 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 DDX6P26196 483 aaKnown RBP eCLIP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 LONP1P36776 959 aaKnown RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 DHPSP49366 369 aaPredicted RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 CACNA2D1P54289 1103 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 RPL10AP62906 217 aaKnown RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 IRX4P78413 519 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 MYL7Q01449 175 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 CYP27A1Q02318 531 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 IFRD2Q12894 506 aaPredicted RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 KCNB1Q14721 858 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 ELF2Q15723 593 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 NFE2Q16621 373 aaPredicted RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 L1TD1Q5T7N2 865 aaKnown RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 SH3PXD2AQ5TCZ1 1133 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 CAMKK1Q8N5S9 505 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 KCTD17Q8N5Z5 321 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 DEFB119Q8N690 84 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 ALLCQ8N6M5 410 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 DEFB124Q8NES8 71 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 MDGA1Q8NFP4 955 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 USP33Q8TEY7 942 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 KBTBD7Q8WVZ9 684 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 PIGKQ92643 395 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 ACBD6Q9BR61 282 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 STRA6Q9BX79 667 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 RNF38Q9H0F5 515 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 CRTAC1Q9NQ79 661 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEM30AQ9NV96 361 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 SMC3Q9UQE7 1217 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 MSRB2Q9Y3D2 182 aa9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.26□□□□□ -0.93
SHKBP1-220ENST00000599716 MYO18AQ92614 2054 aaKnown RBP9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 PTPRQQ9UMZ3 2332 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 FLNCQ14315 2725 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms