RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ATMINO43313 823 aaPredicted RBP16.29■□□□□ 0.2
UPF1-206ENST00000598471 BUB1O43683 1085 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 MTA2O94776 668 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 MOCS3O95396 460 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 BDNFP23560 247 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 MAP3K7CLP57077 242 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 ETF1P62495 437 aaKnown RBP16.29■□□□□ 0.2
UPF1-206ENST00000598471 UBE3AQ05086 875 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 LRIT3Q3SXY7 679 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 ZNF569Q5MCW4 686 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 CYP4A22Q5TCH4 519 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 PLEKHA7Q6IQ23 1121 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 SLC8B1Q6J4K2 584 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 PMF1Q6P1K2 205 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 TMEM110Q86TL2 294 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 PIGZQ86VD9 579 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 C3orf20Q8ND61 904 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 ZNF564Q8TBZ8 553 aaPredicted RBP16.29■□□□□ 0.2
UPF1-206ENST00000598471 KCTD13Q8WZ19 329 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 C11orf84Q9BUA3 381 aaPredicted RBP16.29■□□□□ 0.2
UPF1-206ENST00000598471 SELENOOQ9BVL4 669 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 CSNK1G1Q9HCP0 422 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 PNPLA8Q9NP80 782 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 ABI2Q9NYB9 513 aaPredicted RBP16.29■□□□□ 0.2
UPF1-206ENST00000598471 LCMT1Q9UIC8 334 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.28■□□□□ 0.2
UPF1-206ENST00000598471 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.28■□□□□ 0.2
UPF1-206ENST00000598471 E5RJQ4 531 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 TULP2O00295 520 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 TRIM66O15016 1216 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 ABL1P00519 1130 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 ERBB2P04626 1255 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 CTSAP10619 480 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 TNNT1P13805 278 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 MAGEA11P43364 429 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 RAB30Q15771 203 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 C2CD6Q53TS8 623 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 OR6B2Q6IFH4 312 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 DCUN1D2Q6PH85 259 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 XYLT1Q86Y38 959 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 SYCE1Q8N0S2 351 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 SIX6OS1Q8N1H7 587 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 TGS1Q96RS0 853 aaKnown RBP16.28■□□□□ 0.2
UPF1-206ENST00000598471 SMOQ99835 787 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 ZBP1Q9H171 429 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 MSRAQ9UJ68 235 aa16.28■□□□□ 0.2
UPF1-206ENST00000598471 MTMR11A4FU01 709 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 C5orf67F2Z3F1 127 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 GOLGA8SH3BPF8 625 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 SART1O43290 800 aaKnown RBP16.27■□□□□ 0.2
UPF1-206ENST00000598471 LPXNO60711 386 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 FBXO21O94952 628 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 CA3P07451 260 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 LCP1P13796 627 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 DNAJB2P25686 324 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 OR1D2P34982 312 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 CA8P35219 290 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 SCNN1AP37088 669 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 GRIK1P39086 918 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 RPL34P49207 117 aaKnown RBP16.27■□□□□ 0.2
UPF1-206ENST00000598471 ROR1Q01973 937 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 MAMLD1Q13495 774 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 DNTTIP2Q5QJE6 756 aaKnown RBP16.27■□□□□ 0.2
UPF1-206ENST00000598471 FAM102AQ5T9C2 384 aaPredicted RBP16.27■□□□□ 0.2
UPF1-206ENST00000598471 TPGS2Q68CL5 300 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 TMC7Q7Z402 723 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 TPCN2Q8NHX9 752 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 LRCH3Q96II8 777 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 PGLYRP2Q96PD5 576 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 IRX2Q9BZI1 471 aaPredicted RBP16.27■□□□□ 0.2
UPF1-206ENST00000598471 OSGEPQ9NPF4 335 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 FNIP2Q9P278 1114 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 SALL4Q9UJQ4 1053 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 ANAPC7Q9UJX3 599 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 PCDHGC5Q9Y5F6 944 aa16.27■□□□□ 0.2
UPF1-206ENST00000598471 KRT3P12035 628 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 DESP17661 470 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 CYP2F1P24903 491 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 CASQ1P31415 396 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 PBX2P40425 430 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 NDUFV1P49821 464 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 RPL10AP62906 217 aaKnown RBP16.26■□□□□ 0.19
UPF1-206ENST00000598471 ADIGQ0VDE8 80 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 RSPO2Q6UXX9 243 aaPredicted RBP16.26■□□□□ 0.19
UPF1-206ENST00000598471 FAM183BPQ6ZVS7 135 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 PHLDB2Q86SQ0 1253 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 SCN4BQ8IWT1 228 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 SLC35F6Q8N357 371 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 ZMIZ2Q8NF64 920 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 FEZF2Q8TBJ5 459 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 UBE2Q2Q8WVN8 375 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 MCRS1Q96EZ8 462 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 C8orf48Q96LL4 319 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 CLSTN3Q9BQT9 956 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 C17orf80Q9BSJ5 609 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 RHOBTB2Q9BYZ6 727 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 ENTPD7Q9NQZ7 604 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 TJP2Q9UDY2 1190 aa16.26■□□□□ 0.19
UPF1-206ENST00000598471 AFF4Q9UHB7 1163 aaKnown RBP16.26■□□□□ 0.19
UPF1-206ENST00000598471 DNAI1Q9UI46 699 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms