RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 UNQ6494/PRO21346Q6UXR6 183 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 DPH6Q7L8W6 267 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 TMEM86AQ8N2M4 240 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 TC2NQ8N9U0 490 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 RBBP8NLQ8NC74 664 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 CCDC112Q8NEF3 446 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 SYN2Q92777 582 aaPredicted RBP12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 SUSD3Q96L08 255 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 EPS15L1Q9UBC2 864 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 IRAK3Q9Y616 596 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 COL4A3Q01955 1670 aa12.82□□□□□ -0.36
SHKBP1-213ENST00000597325 UNC79Q9P2D8 2635 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 I3L4J1 428 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 TAF4O00268 1085 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 FOXN3O00409 490 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 TM4SF5O14894 197 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 TACC1O75410 805 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 PNMA6AP0CW24 399 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 BRCC3P46736 316 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 PDE6CP51160 858 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 CDH8P55286 799 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 BPIFB4P59827 614 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 RING1Q06587 406 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 INCA1Q0VD86 236 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SOWAHAQ2M3V2 549 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 TMEM270Q6UE05 265 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 PDCL2Q8N4E4 241 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 OR6B3Q8NGW1 331 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SPATA18Q8TC71 538 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 NXPE3Q969Y0 559 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 TMEM169Q96HH4 297 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 DDX23Q9BUQ8 820 aaKnown RBP12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 TMEM121BQ9BXQ6 578 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SDCBP2Q9H190 292 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SFXN1Q9H9B4 322 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SLC2A4RGQ9NR83 387 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SPATA6Q9NWH7 488 aaPredicted RBP12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 MARCH5Q9NX47 278 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SPG21Q9NZD8 308 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 PCDHB8Q9UN66 801 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 L1RE1Q9UN81 338 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 TSC2P49815 1807 aa12.81□□□□□ -0.36
SHKBP1-213ENST00000597325 SCN1AP35498 2009 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 NT5C1B-RDH14C9J2C7 533 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 F8W810 466 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 RNF225M0QZC1 329 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 M0QZQ0 153 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 CILPO75339 1184 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 CXCL14O95715 111 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 SERPING1P05155 500 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 FAM163BP0C2L3 166 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 TYMPP19971 482 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 ACO1P21399 889 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 WARSP23381 471 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 LHX1P48742 406 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 PTK2Q05397 1052 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 KLHL30Q0D2K2 578 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 ARID5BQ14865 1188 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 PTPN14Q15678 1187 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 WSCD1Q658N2 575 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 FUT10Q6P4F1 479 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 PRR23CQ6ZRP0 262 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 VPS36Q86VN1 386 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 GPIHBP1Q8IV16 184 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 FAM71AQ8IYT1 594 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 SLC39A11Q8N1S5 342 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 UBR7Q8N806 425 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 BAG1Q99933 345 aaPredicted RBP12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 MRPL45Q9BRJ2 306 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 NT5C1AQ9BXI3 368 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 GPR88Q9GZN0 384 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 SEMA4GQ9NTN9 838 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 AIPL1Q9NZN9 384 aa12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 BZW2Q9Y6E2 419 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-213ENST00000597325 SRRM3A6NNA2 597 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 A8MXQ7 604 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 SYN3O14994 580 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 CYP26A1O43174 497 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 CYP11A1P05108 521 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 KCNA4P22459 653 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 HNRNPH3P31942 346 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 NDST1P52848 882 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 MEA1Q16626 185 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 ZNF394Q53GI3 561 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 FAM171A1Q5VUB5 890 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 LAIR1Q6GTX8 287 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 OVOS1Q6IE37 1185 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 CD300LGQ6UXG3 332 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 CYP26C1Q6V0L0 522 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 UNC93AQ86WB7 457 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 THEM5Q8N1Q8 247 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 TRIM44Q96DX7 344 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 IGSF21Q96ID5 467 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 TNIP3Q96KP6 325 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 ZBP1Q9H171 429 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 DEF6Q9H4E7 631 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 DDX43Q9NXZ2 648 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 STK39Q9UEW8 545 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 LHX6Q9UPM6 363 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms