RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SH3GL3	Q99963	347 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	SEZ6L	Q9BYH1	1024 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	HOMER3	Q9NSC5	361 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	FAM49B	Q9NUQ9	324 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	TSC2	P49815	1807 aa		16.2	■□□□□ 0.18
DDX39A-209	ENST00000589318	PODXL	O00592	558 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	INPPL1	O15357	1258 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	FGG	P02679	453 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	PDGFRB	P09619	1106 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	PYGM	P11217	842 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	WARS	P23381	471 aa	Known RBP	16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	MAN1A1	P33908	653 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	GNL1	P36915	607 aa	Predicted RBP	16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	XRCC4	Q13426	336 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	CFAP58	Q5T655	872 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	LRRC8D	Q7L1W4	858 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	IFT20	Q8IY31	132 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	TET1	Q8NFU7	2136 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	ARL8A	Q96BM9	186 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	PGBD4	Q96DM1	585 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	C18orf8	Q96DM3	657 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	GDAP1L1	Q96MZ0	367 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	SPATS2L	Q9NUQ6	558 aa	Known RBP	16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	NR2E1	Q9Y466	385 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	CYB561D2	O14569	222 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	GABRD	O14764	452 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	HUS1	O60921	280 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	POMC	P01189	267 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	SKI	P12755	728 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	SELP	P16109	830 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	MRPS25	P82663	173 aa	Known RBP	16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	UPP1	Q16831	310 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	IQCK	Q8N0W5	287 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	AP1M1	Q9BXS5	423 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	RNF208	Q9H0X6	261 aa		16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	DMGDH	Q9UI17	866 aa	Known RBP	16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	16.19	■□□□□ 0.18
DDX39A-209	ENST00000589318	TANC1	Q9C0D5	1861 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	ANKRD33B	A6NCL7	494 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	CASTOR2	A6NHX0	329 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	SIGLEC16	A6NMB1	481 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	NBN	O60934	754 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	ZMYND10	O75800	440 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	DNAJC8	O75937	253 aa	Predicted RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	PAX7	P23759	505 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	RPL9	P32969	192 aa	Known RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	MNX1	P50219	401 aa	Predicted RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	TAS2R40	P59535	323 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	PSMC1	P62191	440 aa	Known RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	TAP1	Q03518	808 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	ZNF268	Q14587	947 aa	Predicted RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	WSCD1	Q658N2	575 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	CEP57	Q86XR8	500 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	GSPT2	Q8IYD1	628 aa	Known RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	EIF1AD	Q8N9N8	165 aa	Known RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	JOSD2	Q8TAC2	188 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	MCRS1	Q96EZ8	462 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	DDX27	Q96GQ7	796 aa	Known RBP	16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	SENP8	Q96LD8	212 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	ZIM3	Q96PE6	472 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	SNX25	Q9H3E2	840 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	UBN1	Q9NPG3	1134 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	IP6K2	Q9UHH9	426 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	SCN5A	Q14524	2016 aa		16.18	■□□□□ 0.18
DDX39A-209	ENST00000589318	GOLGA8S	H3BPF8	625 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	GABBR2	O75899	941 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	FAM163B	P0C2L3	166 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	CCDC130	P13994	396 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	IBSP	P21815	317 aa	Predicted RBP	16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	GBP2	P32456	591 aa	Predicted RBP	16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	RFC1	P35251	1148 aa	Predicted RBP	16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	RWDD2B	P57060	319 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	FAM189B	P81408	668 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	IFT88	Q13099	833 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	PMF1	Q6P1K2	205 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	CD300LG	Q6UXG3	332 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	SLC24A5	Q71RS6	500 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	ZDHHC14	Q8IZN3	488 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	SLC35F5	Q8WV83	523 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	ATP6V1G3	Q96LB4	118 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	KRT12	Q99456	494 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	CENPH	Q9H3R5	247 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	WDR35	Q9P2L0	1181 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318		E5RJQ4	531 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	KRIT1	O00522	736 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	TCF4	P15884	667 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	SSR1	P43307	286 aa	Known RBP	16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	CCDC142	Q17RM4	750 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	DCUN1D2	Q6PH85	259 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	LRIG3	Q6UXM1	1119 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	NIPA2	Q8N8Q9	360 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318	SLC4A5	Q9BY07	1137 aa		16.17	■□□□□ 0.18
DDX39A-209	ENST00000589318		F8VP50	259 aa		16.16	■□□□□ 0.18
DDX39A-209	ENST00000589318	CCDC188	H7C350	402 aa		16.16	■□□□□ 0.18
DDX39A-209	ENST00000589318	PSTPIP1	O43586	416 aa		16.16	■□□□□ 0.18
DDX39A-209	ENST00000589318	MGRN1	O60291	552 aa		16.16	■□□□□ 0.18
DDX39A-209	ENST00000589318	ATP2C2	O75185	946 aa		16.16	■□□□□ 0.18
DDX39A-209	ENST00000589318	EOMES	O95936	686 aa		16.16	■□□□□ 0.18
DDX39A-209	ENST00000589318	SETSIP	P0DME0	302 aa		16.16	■□□□□ 0.18

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms