RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TRIM66O15016 1216 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 ATP2C2O75185 946 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 TACC1O75410 805 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 RHOBTB1O94844 696 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 BDNFP23560 247 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 ANXA13P27216 316 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 PMLP29590 882 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 PSMC1P62191 440 aaKnown RBP12.68□□□□□ -0.38
LIG3-209ENST00000586435 NOP14P78316 857 aaKnown RBP12.68□□□□□ -0.38
LIG3-209ENST00000586435 SLC7A9P82251 487 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 E2F4Q16254 413 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 STPG1Q5TH74 334 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 CNNM4Q6P4Q7 775 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 EPM2AIP1Q7L775 607 aaPredicted RBP12.68□□□□□ -0.38
LIG3-209ENST00000586435 C11orf74Q86VG3 221 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 MYCBPAPQ8TBZ2 947 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 NOC3LQ8WTT2 800 aaKnown RBP12.68□□□□□ -0.38
LIG3-209ENST00000586435 PCED1BQ96HM7 432 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 C8orf48Q96LL4 319 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 TRIM9Q9C026 710 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 RXFP3Q9NSD7 469 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 POLR3BQ9NW08 1133 aaPredicted RBP12.68□□□□□ -0.38
LIG3-209ENST00000586435 TRPM5Q9NZQ8 1165 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 USP24Q9UPU5 2620 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 TNRC6BQ9UPQ9 1833 aaKnown RBP12.67□□□□□ -0.38
LIG3-209ENST00000586435 TULP1O00294 542 aaPredicted RBP12.67□□□□□ -0.38
LIG3-209ENST00000586435 HOXD13P35453 343 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 GRIK1P39086 918 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 OPRD1P41143 372 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 USP46P62068 366 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 SNRPFP62306 86 aaKnown RBP12.67□□□□□ -0.38
LIG3-209ENST00000586435 SHC2P98077 582 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 ZXDBP98169 803 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 CCDC6Q16204 474 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 ST3GAL2Q16842 350 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 GAB4Q2WGN9 574 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 TRAPPC11Q7Z392 1133 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 RASSF3Q86WH2 238 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 PDILTQ8N807 584 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 LINC00301Q8NCQ3 95 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 GLIS3Q8NEA6 775 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 TSTD1Q8NFU3 115 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 ZNF507Q8TCN5 953 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 USP33Q8TEY7 942 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 CGRRF1Q99675 332 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 PANK2Q9BZ23 570 aa12.67□□□□□ -0.38
LIG3-209ENST00000586435 BCLAF3A2AJT9 711 aaKnown RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 ZNF840PA6NDX5 716 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 K7EQS6 105 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 LEFTY2O00292 366 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 PPP6R2O75170 966 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 KRT37O76014 449 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 STAU1O95793 577 aaKnown RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 OAS1P00973 400 aaKnown RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 CENPBP07199 599 aaPredicted RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 EIF2DP41214 584 aaKnown RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 PI4KAP42356 2102 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 AMPD3Q01432 767 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 CYP27A1Q02318 531 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 PSMD2Q13200 908 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 PSMD6Q15008 389 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 SNRNP35Q16560 246 aaKnown RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 PMS2CLQ68D20 193 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 TTC16Q8NEE8 873 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 CNOT6LQ96LI5 555 aaKnown RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 MMS19Q96T76 1030 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 LSM14BQ9BX40 385 aaKnown RBP12.66□□□□□ -0.38
LIG3-209ENST00000586435 ELOVL4Q9GZR5 314 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 LINC00597Q9H2U6 94 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 AGPAT3Q9NRZ7 376 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 ANGPTL2Q9UKU9 493 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 MMP17Q9ULZ9 603 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 NME7Q9Y5B8 376 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 MYH10P35580 1976 aa12.66□□□□□ -0.38
LIG3-209ENST00000586435 F8VP50 259 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 SLC9A3R1O14745 358 aaPredicted RBP12.65□□□□□ -0.38
LIG3-209ENST00000586435 TGFB1I1O43294 461 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 STX6O43752 255 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 CAVIN2O95810 425 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 CYP17A1P05093 508 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 PDGFRBP09619 1106 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 GNL1P36915 607 aaPredicted RBP12.65□□□□□ -0.38
LIG3-209ENST00000586435 DGKEP52429 567 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 MRPS21P82921 87 aaKnown RBP12.65□□□□□ -0.38
LIG3-209ENST00000586435 CYP24A1Q07973 514 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 EHHADHQ08426 723 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 STK38Q15208 465 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 HSF5Q4G112 596 aaPredicted RBP12.65□□□□□ -0.38
LIG3-209ENST00000586435 USP39Q53GS9 565 aaKnown RBP12.65□□□□□ -0.38
LIG3-209ENST00000586435 MDH1BQ5I0G3 518 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 FAM26FQ5R3K3 315 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 N4BP2L1Q5TBK1 243 aaPredicted RBP12.65□□□□□ -0.38
LIG3-209ENST00000586435 RNF43Q68DV7 783 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 FILIP1Q7Z7B0 1213 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 DDX42Q86XP3 938 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIG3-209ENST00000586435 C12orf56Q8IXR9 622 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 HPS3Q969F9 1004 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 SLITRK1Q96PX8 696 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 FNBP1Q96RU3 617 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 MRPL45Q9BRJ2 306 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms