RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 DEFB118Q96PH6 123 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 HIST1H2AJQ99878 128 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 TREX2Q9BQ50 279 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 WDCPQ9H6R7 721 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 PREBQ9HCU5 417 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 SAYSD1Q9NPB0 183 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 PAK6Q9NQU5 681 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 KCND1Q9NSA2 647 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 KRT84Q9NSB2 600 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 TBC1D23Q9NUY8 699 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 NFKBIL1Q9UBC1 381 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 TNFRSF10DQ9UBN6 386 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 PALD1Q9ULE6 856 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 ADAMTS8Q9UP79 889 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS53-219ENST00000576019 ADGRA2Q96PE1 1338 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 ANKRD17O75179 2603 aaKnown RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 SPEGQ15772 3267 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 TEP1Q99973 2627 aaKnown RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 A0A0A6YYJ9 748 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 FAM170BA6NMN3 283 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 CLCA1A8K7I4 914 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 P4HA2O15460 535 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 NRP2O60462 931 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 DOK2O60496 412 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 USP2O75604 605 aaPredicted RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 KRT38O76015 456 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 ESR1P03372 595 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 DNTTP04053 509 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 TGFB3P10600 412 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 ALOX15P16050 662 aaPredicted RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 HDCP19113 662 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 ZEB1P37275 1124 aaPredicted RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 CCR5P51681 352 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 ARFIP2P53365 341 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 SEC24CP53992 1094 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 OXCT1P55809 520 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 NRG3P56975 720 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 CORO7P57737 925 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 ROR1Q01973 937 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 EXOSC9Q06265 439 aaKnown RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 SLC13A2Q13183 592 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 CUL4BQ13620 913 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 LRP8Q14114 963 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 ADGRE1Q14246 886 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 KIF22Q14807 665 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 RAB39AQ14964 217 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 SMAD1Q15797 465 aaKnown RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 CDC37Q16543 378 aaPredicted RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 ZNF783Q6ZMS7 281 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 CCDC129Q6ZRS4 1044 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 MILR1Q7Z6M3 343 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 KBTBD7Q8WVZ9 684 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 SEC14L1Q92503 715 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 RMDN1Q96DB5 314 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 MFSD14AQ96MC6 490 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 PRPF18Q99633 342 aaKnown RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 PRRX2Q99811 253 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 LBHD1Q9BQE6 289 aaPredicted RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 DBNDD2Q9BQY9 259 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 PDCD2LQ9BRP1 358 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 C1orf43Q9BWL3 253 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 AMNQ9BXJ7 453 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 EIF2AQ9BY44 585 aaKnown RBP6.45□□□□□ -1.38
VPS53-219ENST00000576019 MANSC1Q9H8J5 431 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 RXFP1Q9HBX9 757 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 SLC39A2Q9NP94 309 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 SEMA3GQ9NS98 782 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 TBC1D29Q9UFV1 150 aa6.45□□□□□ -1.38
VPS53-219ENST00000576019 KTN1Q86UP2 1357 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 FAM170AA1A519 330 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 PRR23AA6NEV1 266 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 F5H0A9 414 aaPredicted RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 BTN3A1O00481 513 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 FCHO1O14526 889 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 SGSM2O43147 1006 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 TBC1D4O60343 1298 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 SEC24DO94855 1032 aaPredicted RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 ENDOD1O94919 500 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 IL1R1P14778 569 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 FAHP16930 419 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 RXRAP19793 462 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 PTGS1P23219 599 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 STAT1P42224 750 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 KCNJ5P48544 419 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 CASP6P55212 293 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 UBE3AQ05086 875 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 TSTQ16762 297 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 CCDC178Q5BJE1 867 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 USP49Q70CQ1 688 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 TMPRSS7Q7RTY8 843 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 ZAR1Q86SH2 424 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 MICU3Q86XE3 530 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 DCP2Q8IU60 420 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 PLD6Q8N2A8 252 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 ZGPATQ8N5A5 531 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 OR1N1Q8NGS0 311 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 RAET1EQ8TD07 263 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 CALML6Q8TD86 181 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 RFFLQ8WZ73 363 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms