RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SPATA2LQ8IUW3 424 aaPredicted RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 TMEM139Q8IV31 216 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 MICALL1Q8N3F8 863 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 SMRP1Q8NCR6 262 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 UBA3Q8TBC4 463 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 CPLX3Q8WVH0 158 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 SUSD6Q92537 303 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 SYN2Q92777 582 aaPredicted RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 CASP10Q92851 521 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 SMARCD1Q96GM5 515 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 SPATA17Q96L03 361 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 MYRFLQ96LU7 910 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 PCMTD1Q96MG8 357 aaPredicted RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 NUP58Q9BVL2 599 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 TTLL2Q9BWV7 592 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 UBE2ZQ9H832 354 aaPredicted RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 CYP4F11Q9HBI6 524 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 ZDHHC7Q9NXF8 308 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 ARHGAP20Q9P2F6 1191 aa9.84□□□□□ -0.83
VPS35-211ENST00000569950 DNMT3BQ9UBC3 853 aaKnown RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 NUP210Q8TEM1 1887 aaPredicted RBP9.84□□□□□ -0.83
VPS35-211ENST00000569950 NCANO14594 1321 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 GOLGA6L3A6NEY3 463 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 GRXCR2A6NFK2 248 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 CCL16O15467 120 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 THAP12O43422 761 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 AP1G2O75843 785 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 CYP1A1P04798 512 aaPredicted RBP9.83□□□□□ -0.84
VPS35-211ENST00000569950 HNRNPA1P09651 372 aaKnown RBP eCLIP9.83□□□□□ -0.84
VPS35-211ENST00000569950 SKILP12757 684 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 UNGP13051 313 aaPredicted RBP9.83□□□□□ -0.84
VPS35-211ENST00000569950 KRT9P35527 623 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 USP8P40818 1118 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PLA2G4AP47712 749 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 MAP3K7CLP57077 242 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 NTHL1P78549 312 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PLCB2Q00722 1185 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 CDR2Q01850 454 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PTK2Q05397 1052 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 TWF1Q12792 350 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PTP4A2Q12974 167 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 BMS1Q14692 1282 aaKnown RBP9.83□□□□□ -0.84
VPS35-211ENST00000569950 SLC5A9Q2M3M2 681 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PRSS36Q5K4E3 855 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 TMC5Q6UXY8 1006 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 GAREM2Q75VX8 874 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 RTL10Q7L3V2 364 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 GPR149Q86SP6 731 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PIGZQ86VD9 579 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 HS6ST3Q8IZP7 471 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 SCAMP5Q8TAC9 235 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 SLC30A5Q8TAD4 765 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 SECISBP2LQ93073 1101 aaKnown RBP9.83□□□□□ -0.84
VPS35-211ENST00000569950 PSMG2Q969U7 264 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 IQCDQ96DY2 449 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PDLIM2Q96JY6 352 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 SPAG5Q96R06 1193 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 SEPT5Q99719 369 aaPredicted RBP9.83□□□□□ -0.84
VPS35-211ENST00000569950 SLC4A5Q9BY07 1137 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 PRKD2Q9BZL6 878 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 LHX5Q9H2C1 402 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 DMAP1Q9NPF5 467 aaPredicted RBP9.83□□□□□ -0.84
VPS35-211ENST00000569950 DZANK1Q9NVP4 752 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 CLDND1Q9NY35 253 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 LUC7L2Q9Y383 392 aaKnown RBP9.83□□□□□ -0.84
VPS35-211ENST00000569950 USP3Q9Y6I4 520 aa9.83□□□□□ -0.84
VPS35-211ENST00000569950 MUC3AQ02505 3323 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 CCDC195A0A1B0GUA6 201 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 SLC38A8A6NNN8 435 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 H3BQ06 376 aaPredicted RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 DDX3XO00571 662 aaKnown RBP eCLIP9.82□□□□□ -0.842e-9■■■■■ 46.6
VPS35-211ENST00000569950 PRRG1O14668 218 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 XPO1O14980 1071 aaKnown RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 TPM3P06753 285 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 ZDHHC11BP0C7U3 371 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 FAM200BP0CF97 657 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 FERP16591 822 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 TUFMP49411 452 aaKnown RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 KIF11P52732 1056 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 BCAT1P54687 386 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 NOMO3P69849 1222 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 BST2Q10589 180 aaKnown RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 TRIM14Q14142 442 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 GSE1Q14687 1217 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 MGAT5BQ3V5L5 792 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 RARS2Q5T160 578 aaKnown RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 TAF3Q5VWG9 929 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 CCDC149Q6ZUS6 474 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 CACNA2D4Q7Z3S7 1137 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 DNAJB7Q7Z6W7 309 aaPredicted RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 PASD1Q8IV76 773 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 SCN4BQ8IWT1 228 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 MAFAQ8NHW3 353 aaPredicted RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 GIPC2Q8TF65 315 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 KCTD13Q8WZ19 329 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 KHSRPQ92945 711 aaKnown RBP eCLIP9.82□□□□□ -0.84
VPS35-211ENST00000569950 TCEAL4Q96EI5 215 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 TRMT2BQ96GJ1 504 aaKnown RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 PIWIL1Q96J94 861 aaKnown RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 CPXM1Q96SM3 734 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms