RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LGALS4P56470 323 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 UBASH3AP57075 661 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 TBX4P57082 545 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 GEMIN4P57678 1058 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 POLR2FP61218 127 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 GPSM2P81274 684 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 ZXDAP98168 799 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 PLOD1Q02809 727 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 POU5F1BQ06416 359 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 MSLNQ13421 630 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 TNIP1Q15025 636 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SAFBQ15424 915 aaKnown RBP eCLIP3.5□□□□□ -1.85
VPS35-208ENST00000568612 UGT8Q16880 541 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 WHAMMP3Q1A5X7 153 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SHROOM1Q2M3G4 852 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 SGSM1Q2NKQ1 1148 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 ERCC6LQ2NKX8 1250 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 PROSER3Q2NL68 480 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 CCDC153Q494R4 210 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 GAGE13Q4V321 117 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 FKBP15Q5T1M5 1219 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 LMBRD2Q68DH5 695 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 KRTAP5-3Q6L8H2 238 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SLC2A7Q6PXP3 512 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 MAMDC4Q6UXC1 1216 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 Q6ZSN1 163 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 CCDC121Q6ZUS5 278 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 NLRP9Q7RTR0 991 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 C14orf80Q86SX3 495 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 ZNF554Q86TJ5 538 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 LUZP1Q86V48 1076 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 EXOC3L1Q86VI1 746 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 GRAMD2AQ8IUY3 354 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 C1orf210Q8IVY1 113 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 GLB1L2Q8IW92 636 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 GSPT2Q8IYD1 628 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 CMTM4Q8IZR5 234 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 TMCO5AQ8N6Q1 288 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 MB21D1Q8N884 522 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 CLRN3Q8NCR9 226 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 PIK3C3Q8NEB9 887 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 TNIP2Q8NFZ5 429 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 CCHCR1Q8TD31 782 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SGCDQ92629 289 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 CDKL2Q92772 493 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SKA1Q96BD8 255 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 EAF2Q96CJ1 260 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 PGBD4Q96DM1 585 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 RPGRIP1Q96KN7 1286 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SOX7Q9BT81 388 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 FAM167BQ9BTA0 163 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 OSBPL6Q9BZF3 934 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 KCTD10Q9H3F6 313 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 BICC1Q9H694 974 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 ACTR5Q9H9F9 607 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 PREBQ9HCU5 417 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 SLC40A1Q9NP59 571 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 ARFGAP3Q9NP61 516 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 STAP2Q9UGK3 403 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 POLG2Q9UHN1 485 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 TCEAL9Q9UHQ7 104 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 HOOK1Q9UJC3 728 aaKnown RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 TTC7AQ9ULT0 858 aaPredicted RBP3.5□□□□□ -1.85
VPS35-208ENST00000568612 C15orf41Q9Y2V0 281 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 GIT1Q9Y2X7 761 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 TESMINQ9Y4I5 508 aa3.5□□□□□ -1.85
VPS35-208ENST00000568612 EHBP1L1Q8N3D4 1523 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 KDM5DQ9BY66 1539 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 GAKO14976 1311 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 PHLPP2Q6ZVD8 1323 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CLTCL1P53675 1640 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 AKAP12Q02952 1782 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CCDC151A5D8V7 595 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 FOXN3O00409 490 aaPredicted RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 PLIN1O60240 522 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 BRINP1O60477 761 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 SMIM24O75264 130 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 LY86O95711 162 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 FSHBP01225 129 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 KRT14P02533 472 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ALDH2P05091 517 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 C6P13671 934 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 GYS1P13807 737 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 PRLRP16471 622 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ACRV1P26436 265 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ATP5DP30049 168 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 HSPA1LP34931 641 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 SKIV2L2P42285 1042 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 CENPAP49450 140 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 GPR15P49685 360 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 RARSP54136 660 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 MTTPP55157 894 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 SCAND1P57086 179 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 B2MP61769 119 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 AMPD3Q01432 767 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 DR1Q01658 176 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CYP4A11Q02928 519 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ACTN3Q08043 901 aaPredicted RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 KIF5AQ12840 1032 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 MRPL28Q13084 256 aaKnown RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms