RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 RDH13Q8NBN7 331 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 SH3RF2Q8TEC5 729 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 SCFD1Q8WVM8 642 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 CD101Q93033 1021 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 PCED1BQ96HM7 432 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 C8orf48Q96LL4 319 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 CGRRF1Q99675 332 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 TTLL2Q9BWV7 592 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 FBRSL1Q9HCM7 1045 aaKnown RBP17.99■□□□□ 0.47
CLN3-231ENST00000568422 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.98■□□□□ 0.47
CLN3-231ENST00000568422 PVALEFA0A1B0GWK0 134 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 NFATC1O95644 943 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 STAU1O95793 577 aaKnown RBP17.98■□□□□ 0.47
CLN3-231ENST00000568422 CST3P01034 146 aaPredicted RBP17.98■□□□□ 0.47
CLN3-231ENST00000568422 ATICP31939 592 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 TNNC1P63316 161 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 BMT2Q1RMZ1 405 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 WDR72Q3MJ13 1102 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 ATL3Q6DD88 541 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 SYT13Q7L8C5 426 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 C12orf56Q8IXR9 622 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 SNX21Q969T3 373 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 ACDQ96AP0 544 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 FAM13BQ9NYF5 915 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 WNT6Q9Y6F9 365 aa17.98■□□□□ 0.47
CLN3-231ENST00000568422 NCOR2Q9Y618 2525 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 DCDC2BA2VCK2 349 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 POLR2DO15514 142 aaKnown RBP17.97■□□□□ 0.47
CLN3-231ENST00000568422 CCDC192P0DO97 292 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 RAP1GAPP47736 663 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 CYP2J2P51589 502 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 TRPC3Q13507 836 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 TTC16Q8NEE8 873 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 OR6B3Q8NGW1 331 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 GOLGA5Q8TBA6 731 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 DDX1Q92499 740 aaKnown RBP17.97■□□□□ 0.47
CLN3-231ENST00000568422 CCDC127Q96BQ5 260 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 ZC3H10Q96K80 434 aaKnown RBP17.97■□□□□ 0.47
CLN3-231ENST00000568422 MRPL45Q9BRJ2 306 aaKnown RBP17.97■□□□□ 0.47
CLN3-231ENST00000568422 ELOVL4Q9GZR5 314 aa17.97■□□□□ 0.47
CLN3-231ENST00000568422 ZNF840PA6NDX5 716 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 CLIC2O15247 247 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 PTPN1P18031 435 aaKnown RBP17.96■□□□□ 0.47
CLN3-231ENST00000568422 PXNP49023 591 aaPredicted RBP17.96■□□□□ 0.47
CLN3-231ENST00000568422 AP3M2P53677 418 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 SLC7A9P82251 487 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 KNOP1Q1ED39 458 aaKnown RBP17.96■□□□□ 0.47
CLN3-231ENST00000568422 MDH1BQ5I0G3 518 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 NELFCDQ8IXH7 590 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 RPLP0P6Q8NHW5 317 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 SYAP1Q96A49 352 aaPredicted RBP17.96■□□□□ 0.47
CLN3-231ENST00000568422 EBF1Q9UH73 591 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 PCDHGA5Q9Y5G8 931 aa17.96■□□□□ 0.47
CLN3-231ENST00000568422 F8VP50 259 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 SLC9A3R1O14745 358 aaPredicted RBP17.95■□□□□ 0.46
CLN3-231ENST00000568422 AXIN1O15169 862 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 EPN2O95208 641 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 ZNF806P0C7X5 589 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 ZSCAN22P10073 491 aaPredicted RBP17.95■□□□□ 0.46
CLN3-231ENST00000568422 HOXC13P31276 330 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 ME1P48163 572 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 USP46P62068 366 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 TDRD10Q5VZ19 366 aaKnown RBP17.95■□□□□ 0.46
CLN3-231ENST00000568422 SLITRK1Q96PX8 696 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 CFAP45Q9UL16 551 aa17.95■□□□□ 0.46
CLN3-231ENST00000568422 A8MXQ7 604 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 LEFTY2O00292 366 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 EXOC3O60645 756 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 PHACTR2O75167 634 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 APBB3O95704 486 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 OLFM2O95897 454 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 LIMK1P53667 647 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 DMC1Q14565 340 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 RESP18Q5W5W9 173 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 KBTBD6Q86V97 674 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 DDX42Q86XP3 938 aaKnown RBP eCLIP17.94■□□□□ 0.46
CLN3-231ENST00000568422 CEP57L1Q8IYX8 460 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 C12orf50Q8NA57 414 aaPredicted RBP17.94■□□□□ 0.46
CLN3-231ENST00000568422 B3GALNT2Q8NCR0 500 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 PDZD8Q8NEN9 1154 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 TMEM174Q8WUU8 243 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 ZNF516Q92618 1163 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 XYLT2Q9H1B5 865 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 BLZF1Q9H2G9 400 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 ARRDC1-AS1Q9H2J1 176 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 LINC00597Q9H2U6 94 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 VRTNQ9H8Y1 702 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 SLC39A2Q9NP94 309 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 NXF1Q9UBU9 619 aaKnown RBP17.94■□□□□ 0.46
CLN3-231ENST00000568422 PCDHA7Q9UN72 937 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 ATP8B3O60423 1300 aa17.94■□□□□ 0.46
CLN3-231ENST00000568422 RTN3O95197 1032 aaPredicted RBP17.93■□□□□ 0.46
CLN3-231ENST00000568422 F13A1P00488 732 aa17.93■□□□□ 0.46
CLN3-231ENST00000568422 OAS1P00973 400 aaKnown RBP17.93■□□□□ 0.46
CLN3-231ENST00000568422 HSP90AA1P07900 732 aaKnown RBP17.93■□□□□ 0.46
CLN3-231ENST00000568422 MYL6P60660 151 aa17.93■□□□□ 0.46
CLN3-231ENST00000568422 CLDN10P78369 228 aa17.93■□□□□ 0.46
CLN3-231ENST00000568422 ZXDBP98169 803 aa17.93■□□□□ 0.46
CLN3-231ENST00000568422 PSMD2Q13200 908 aa17.93■□□□□ 0.46
CLN3-231ENST00000568422 AASDHQ4L235 1098 aaPredicted RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms