RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NOP14P78316 857 aaKnown RBP19.98■□□□□ 0.79
CLN3-218ENST00000565688 NR1H3Q13133 447 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 WDR72Q3MJ13 1102 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 FOXD4L6Q3SYB3 417 aaPredicted RBP19.98■□□□□ 0.79
CLN3-218ENST00000565688 FOXD4L3Q6VB84 417 aaPredicted RBP19.98■□□□□ 0.79
CLN3-218ENST00000565688 CEP57L1Q8IYX8 460 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 TTC16Q8NEE8 873 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 OR6B3Q8NGW1 331 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 SH3RF2Q8TEC5 729 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 SYAP1Q96A49 352 aaPredicted RBP19.98■□□□□ 0.79
CLN3-218ENST00000565688 C8orf48Q96LL4 319 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 MRPL45Q9BRJ2 306 aaKnown RBP19.98■□□□□ 0.79
CLN3-218ENST00000565688 TTLL2Q9BWV7 592 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 SLC39A2Q9NP94 309 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 EXOC3O60645 756 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 EGFP01133 1207 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 CASP1P29466 404 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 AFMP43652 599 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 SRSF5Q13243 272 aaKnown RBP19.97■□□□□ 0.79
CLN3-218ENST00000565688 EML3Q32P44 896 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 MDH1BQ5I0G3 518 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 CAMKK1Q8N5S9 505 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 CCDC26Q8TAB7 109 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 RTKNQ9BST9 563 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 ELOVL4Q9GZR5 314 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 WNT6Q9Y6F9 365 aa19.97■□□□□ 0.79
CLN3-218ENST00000565688 RNF40O75150 1001 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 SLFN14P0C7P3 912 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 PTPN1P18031 435 aaKnown RBP19.96■□□□□ 0.79
CLN3-218ENST00000565688 AP3M2P53677 418 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 ATXN1P54253 815 aaKnown RBP19.96■□□□□ 0.79
CLN3-218ENST00000565688 CUL4BQ13620 913 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 CSRP2Q16527 193 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 PKN3Q6P5Z2 889 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 FAM160A2Q8N612 972 aaPredicted RBP19.96■□□□□ 0.79
CLN3-218ENST00000565688 KIAA1958Q8N8K9 716 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 GAB3Q8WWW8 586 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 ZNF516Q92618 1163 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 CD101Q93033 1021 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 SEMA4GQ9NTN9 838 aa19.96■□□□□ 0.79
CLN3-218ENST00000565688 A8MXQ7 604 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 F8VP50 259 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 PHACTR2O75167 634 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 NFATC1O95644 943 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 MYL6P60660 151 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 USP46P62068 366 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 TDRD10Q5VZ19 366 aaKnown RBP19.95■□□□□ 0.78
CLN3-218ENST00000565688 NETO1Q8TDF5 533 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 LOXL4Q96JB6 756 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 GZF1Q9H116 711 aaPredicted RBP19.95■□□□□ 0.78
CLN3-218ENST00000565688 XYLT2Q9H1B5 865 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 VRTNQ9H8Y1 702 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 FBRSL1Q9HCM7 1045 aaKnown RBP19.95■□□□□ 0.78
CLN3-218ENST00000565688 NXF1Q9UBU9 619 aaKnown RBP19.95■□□□□ 0.78
CLN3-218ENST00000565688 RCOR1Q9UKL0 485 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 GREB1Q4ZG55 1949 aa19.95■□□□□ 0.78
CLN3-218ENST00000565688 ANAPC1Q9H1A4 1944 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.94■□□□□ 0.78
CLN3-218ENST00000565688 ZNF840PA6NDX5 716 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 RPP40O75818 363 aaKnown RBP19.94■□□□□ 0.78
CLN3-218ENST00000565688 AKAP3O75969 853 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 SLC7A9P82251 487 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 PSMD2Q13200 908 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 CACNA2D4Q7Z3S7 1137 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 B3GALNT2Q8NCR0 500 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 TMEM174Q8WUU8 243 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 ACDQ96AP0 544 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 SLITRK1Q96PX8 696 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 EXOC1Q9NV70 894 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 NME7Q9Y5B8 376 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.94■□□□□ 0.78
CLN3-218ENST00000565688 PTPRDP23468 1912 aa19.94■□□□□ 0.78
CLN3-218ENST00000565688 LEFTY2O00292 366 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 CLDN10P78369 228 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 DNM1Q05193 864 aaKnown RBP19.93■□□□□ 0.78
CLN3-218ENST00000565688 BIRC3Q13489 604 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 PRR23CQ6ZRP0 262 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 SYT13Q7L8C5 426 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 SLC9A9Q8IVB4 645 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 PARD3BQ8TEW8 1205 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 ZNF518BQ9C0D4 1074 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 LINC00597Q9H2U6 94 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 DPEP3Q9H4B8 488 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 USP25Q9UHP3 1055 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 SERTAD1Q9UHV2 236 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 ATP8B3O60423 1300 aa19.93■□□□□ 0.78
CLN3-218ENST00000565688 SLC9A3R1O14745 358 aaPredicted RBP19.92■□□□□ 0.78
CLN3-218ENST00000565688 OLFM2O95897 454 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 CCDC192P0DO97 292 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 HOXC13P31276 330 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 PXNP49023 591 aaPredicted RBP19.92■□□□□ 0.78
CLN3-218ENST00000565688 TAF10Q12962 218 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 ZNF699Q32M78 642 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 NAIF1Q69YI7 327 aaPredicted RBP19.92■□□□□ 0.78
CLN3-218ENST00000565688 GRAMD1CQ8IYS0 662 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 RPLP0P6Q8NHW5 317 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 PAGE5Q96GU1 130 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 TNIP3Q96KP6 325 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 B3GNT5Q9BYG0 378 aa19.92■□□□□ 0.78
CLN3-218ENST00000565688 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms