RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PRR23CQ6ZRP0 262 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 HS2ST1Q7LGA3 356 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 NELFCDQ8IXH7 590 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 KIAA1958Q8N8K9 716 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 EZH1Q92800 747 aaPredicted RBP18.27■□□□□ 0.52
CLN3-216ENST00000565316 CCDC127Q96BQ5 260 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 LOXL4Q96JB6 756 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 SNX25Q9H3E2 840 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 EHD2Q9NZN4 543 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 PCDHA7Q9UN72 937 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 SLC8A2Q9UPR5 921 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 WNT6Q9Y6F9 365 aa18.27■□□□□ 0.52
CLN3-216ENST00000565316 GREB1Q4ZG55 1949 aa18.27■□□□□ 0.51
CLN3-216ENST00000565316 ANAPC1Q9H1A4 1944 aa18.27■□□□□ 0.51
CLN3-216ENST00000565316 ZNF840PA6NDX5 716 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 SLC30A4O14863 429 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 TRIM66O15016 1216 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 AKAP3O75969 853 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 ZSCAN22P10073 491 aaPredicted RBP18.26■□□□□ 0.51
CLN3-216ENST00000565316 PTPN1P18031 435 aaKnown RBP18.26■□□□□ 0.51
CLN3-216ENST00000565316 ANXA13P27216 316 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 CASP1P29466 404 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 RAP1GAPP47736 663 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 PPP3CCP48454 512 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 ZXDBP98169 803 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 WDR72Q3MJ13 1102 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 MDH1BQ5I0G3 518 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 RESP18Q5W5W9 173 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 ATL3Q6DD88 541 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 CACNA2D4Q7Z3S7 1137 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 CD101Q93033 1021 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 XYLT2Q9H1B5 865 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 BLZF1Q9H2G9 400 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 LINC00597Q9H2U6 94 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 TRPM5Q9NZQ8 1165 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 TPRP12270 2363 aaKnown RBP18.26■□□□□ 0.51
CLN3-216ENST00000565316 ACACBO00763 2458 aa18.26■□□□□ 0.51
CLN3-216ENST00000565316 DCDC2BA2VCK2 349 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 F8VP50 259 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 RPP40O75818 363 aaKnown RBP18.25■□□□□ 0.51
CLN3-216ENST00000565316 OLFM2O95897 454 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 ATICP31939 592 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 PXNP49023 591 aaPredicted RBP18.25■□□□□ 0.51
CLN3-216ENST00000565316 SLC7A9P82251 487 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 NR1H3Q13133 447 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 KNOP1Q1ED39 458 aaKnown RBP18.25■□□□□ 0.51
CLN3-216ENST00000565316 FOXD4L5Q5VV16 416 aaPredicted RBP18.25■□□□□ 0.51
CLN3-216ENST00000565316 OR6B3Q8NGW1 331 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 TMEM174Q8WUU8 243 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 FOXD4L4Q8WXT5 416 aaPredicted RBP18.25■□□□□ 0.51
CLN3-216ENST00000565316 VRTNQ9H8Y1 702 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 SLC39A2Q9NP94 309 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 TMEM30AQ9NV96 361 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 POLR3BQ9NW08 1133 aaPredicted RBP18.25■□□□□ 0.51
CLN3-216ENST00000565316 PTPRDP23468 1912 aa18.25■□□□□ 0.51
CLN3-216ENST00000565316 F13A1P00488 732 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 CACNA2D1P54289 1103 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 MYL6P60660 151 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 TNNC1P63316 161 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 CLDN10P78369 228 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 CUL4BQ13620 913 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 SYT13Q7L8C5 426 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 PLEKHO2Q8TD55 490 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 ZC3H10Q96K80 434 aaKnown RBP18.24■□□□□ 0.51
CLN3-216ENST00000565316 ELOVL4Q9GZR5 314 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 DPEP3Q9H4B8 488 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 FAM13BQ9NYF5 915 aa18.24■□□□□ 0.51
CLN3-216ENST00000565316 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.23■□□□□ 0.51
CLN3-216ENST00000565316 LEFTY2O00292 366 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 EPN2O95208 641 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 NFATC1O95644 943 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 ME1P48163 572 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 TRPC3Q13507 836 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 GAB4Q2WGN9 574 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 KBTBD6Q86V97 674 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 TTC16Q8NEE8 873 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 RPLP0P6Q8NHW5 317 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 GOLGA5Q8TBA6 731 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 SYAP1Q96A49 352 aaPredicted RBP18.23■□□□□ 0.51
CLN3-216ENST00000565316 B3GNT5Q9BYG0 378 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 ZNF518BQ9C0D4 1074 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 RNF38Q9H0F5 515 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 DMAC2Q9NW81 257 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 EBF1Q9UH73 591 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 RCOR1Q9UKL0 485 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 SDK1Q7Z5N4 2213 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 AXIN1O15169 862 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 KLRC4O43908 158 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 GDF9O60383 454 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 EXOC3O60645 756 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 OAS1P00973 400 aaKnown RBP18.23■□□□□ 0.51
CLN3-216ENST00000565316 SLFN14P0C7P3 912 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 OPRD1P41143 372 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 AFMP43652 599 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 AP3M2P53677 418 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 TAF10Q12962 218 aa18.23■□□□□ 0.51
CLN3-216ENST00000565316 FOXD4L6Q3SYB3 417 aaPredicted RBP18.23■□□□□ 0.51
CLN3-216ENST00000565316 TDRD10Q5VZ19 366 aaKnown RBP18.23■□□□□ 0.51
CLN3-216ENST00000565316 FOXD4L3Q6VB84 417 aaPredicted RBP18.23■□□□□ 0.51
CLN3-216ENST00000565316 B3GALNT2Q8NCR0 500 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms