RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MED10Q9BTT4 135 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 IMPG2Q9BZV3 1241 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 ZNF518BQ9C0D4 1074 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 PTPRDP23468 1912 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 USP34Q70CQ2 3546 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 KINO60870 393 aaKnown RBP17.92■□□□□ 0.46
CLK3-210ENST00000563112 AKAP3O75969 853 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 HLA-DRAP01903 254 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 PFKLP17858 780 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 RAP1GAPP47736 663 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 NOP14P78316 857 aaKnown RBP17.92■□□□□ 0.46
CLK3-210ENST00000563112 ENPEPQ07075 957 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 PNOCQ13519 176 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 RUNX3Q13761 415 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 ARL14EPQ8N8R7 260 aaPredicted RBP17.92■□□□□ 0.46
CLK3-210ENST00000563112 CCDC150Q8NCX0 1101 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 TTC16Q8NEE8 873 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 SLITRK1Q96PX8 696 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 TTLL2Q9BWV7 592 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 B3GNT5Q9BYG0 378 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 FAM126AQ9BYI3 521 aaPredicted RBP17.92■□□□□ 0.46
CLK3-210ENST00000563112 GTPBP4Q9BZE4 634 aaKnown RBP17.92■□□□□ 0.46
CLK3-210ENST00000563112 GREB1Q4ZG55 1949 aa17.92■□□□□ 0.46
CLK3-210ENST00000563112 EP300Q09472 2414 aaPredicted RBP17.91■□□□□ 0.46
CLK3-210ENST00000563112 CETN3O15182 167 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 ASS1P00966 412 aaKnown RBP17.91■□□□□ 0.46
CLK3-210ENST00000563112 CCR3P51677 355 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 USP46P62068 366 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 MTF1Q14872 753 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 PON2Q15165 354 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 EDRF1Q3B7T1 1238 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 TXNDC11Q6PKC3 985 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 UNC93AQ86WB7 457 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 ADSSL1Q8N142 457 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 EXOC4Q96A65 974 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 GSDMAQ96QA5 445 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 DNAI2Q9GZS0 605 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 EBF3Q9H4W6 596 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 PRMT8Q9NR22 394 aaPredicted RBP17.91■□□□□ 0.46
CLK3-210ENST00000563112 ZSCAN32Q9NX65 697 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 GCNT4Q9P109 453 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 PCDHGA2Q9Y5H1 932 aa17.91■□□□□ 0.46
CLK3-210ENST00000563112 VPS13AQ96RL7 3174 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 ZNF292O60281 2723 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 FANCMQ8IYD8 2048 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 C2orf78A6NCI8 922 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 CLDN5O00501 218 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 RTN3O95197 1032 aaPredicted RBP17.9■□□□□ 0.46
CLK3-210ENST00000563112 ABL1P00519 1130 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 TRIM49P0CI25 452 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 TRIM49CP0CI26 452 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 CXCL12P48061 93 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 GCLMP48507 274 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 IFNAR2P48551 515 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 NRLP54845 237 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 IFRD2Q12894 506 aaPredicted RBP17.9■□□□□ 0.46
CLK3-210ENST00000563112 ZCWPW2Q504Y3 356 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 C1orf220Q5T0J3 134 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 ZNF658Q5TYW1 1059 aaPredicted RBP17.9■□□□□ 0.46
CLK3-210ENST00000563112 TRIM68Q6AZZ1 485 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 ACOT1Q86TX2 421 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 SMYD4Q8IYR2 804 aaPredicted RBP17.9■□□□□ 0.46
CLK3-210ENST00000563112 NUP93Q8N1F7 819 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 SYNPOQ8N3V7 929 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 SPEM1Q8N4L4 309 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 CPA6Q8N4T0 437 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 ENGASEQ8NFI3 743 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 ELMO3Q96BJ8 720 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 TIGD1Q96MW7 591 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 SLC22A12Q96S37 553 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 TSG101Q99816 390 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 SDCBP2Q9H190 292 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 MMRN2Q9H8L6 949 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 HPS4Q9NQG7 708 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 DUS2Q9NX74 493 aaKnown RBP17.9■□□□□ 0.46
CLK3-210ENST00000563112 GVINP1Q7Z2Y8 2422 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 ANAPC1Q9H1A4 1944 aa17.9■□□□□ 0.46
CLK3-210ENST00000563112 ZNF840PA6NDX5 716 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 STX10O60499 249 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 EPB41P11171 864 aaKnown RBP17.89■□□□□ 0.45
CLK3-210ENST00000563112 YWHAQP27348 245 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 GTF2H1P32780 548 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 NDST1P52848 882 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 CACNA2D1P54289 1103 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 TAF10Q12962 218 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 NR1H3Q13133 447 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 ZNF77Q15935 545 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 SPOPLQ6IQ16 392 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 TSSK4Q6SA08 328 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 FAM35AQ86V20 835 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 CRYBG2Q8N1P7 616 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 PDZD8Q8NEN9 1154 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 SH3RF2Q8TEC5 729 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 OSCP1Q8WVF1 389 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 SMARCE1Q969G3 411 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 SMARCD1Q96GM5 515 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 CYP3A43Q9HB55 503 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 TMEM8AQ9HCN3 771 aa17.89■□□□□ 0.45
CLK3-210ENST00000563112 DMAP1Q9NPF5 467 aaPredicted RBP17.89■□□□□ 0.45
CLK3-210ENST00000563112 RBM12Q9NTZ6 932 aaKnown RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms