RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SERPINB6P35237 376 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 GLUD2P49448 558 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 GPS1Q13098 491 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 THOC5Q13769 683 aaKnown RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 PIGHQ14442 188 aaPredicted RBP9.67□□□□□ -0.86
VPS39-205ENST00000562258 C9orf57Q5W0N0 161 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 FUT10Q6P4F1 479 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 RSPH1Q8WYR4 309 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 SEMA4DQ92854 862 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 SCYL1Q96KG9 808 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 LACRTQ9GZZ8 138 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 PLK2Q9NYY3 685 aa9.67□□□□□ -0.86
VPS39-205ENST00000562258 NCOR1O75376 2440 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 DNAJC25-GNG10A0A024R161 153 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 TRDMT1O14717 391 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 AP5Z1O43299 807 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 APRTP07741 180 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 RBP3P10745 1247 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 GABRR2P28476 465 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 MTERF4Q7Z6M4 381 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 ECHDC2Q86YB7 292 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 NT5DC4Q86YG4 428 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 SPATA18Q8TC71 538 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 MYLPFQ96A32 169 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 CELF6Q96J87 481 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 TCF25Q9BQ70 676 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 F5H5T6 163 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 CBX4O00257 560 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 APOL1O14791 398 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 EFCAB14O75071 495 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 ACSL3O95573 720 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 ASMTLO95671 621 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 LAG3P18627 525 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 GCNT1Q02742 428 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 TAP1Q03518 808 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 CEP85LQ5SZL2 805 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 DENND1BQ6P3S1 775 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 RBM43Q6ZSC3 357 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 NDUFAF2Q8N183 169 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 ATPAF2Q8N5M1 289 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 RNF10Q8N5U6 811 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 AMACRQ9UHK6 382 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 VPS28Q9UK41 221 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 EDNRBP24530 442 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 RPL9P32969 192 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 KPNA1P52294 538 aaPredicted RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 LILRA4P59901 499 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 COG7P83436 770 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 MAPK7Q13164 816 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 PCBP1Q15365 356 aaKnown RBP eCLIP9.66□□□□□ -0.86
VPS39-205ENST00000562258 KCNT2Q6UVM3 1135 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 MAB21L3Q8N8X9 362 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 ING5Q8WYH8 240 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 CCT6BQ92526 530 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 SMG7Q92540 1137 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 NDRG1Q92597 394 aaKnown RBP9.66□□□□□ -0.86
VPS39-205ENST00000562258 OSBPL9Q96SU4 736 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 OSBPL8Q9BZF1 889 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 FZD8Q9H461 694 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 FBXO44Q9H4M3 255 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 VPS18Q9P253 973 aa9.66□□□□□ -0.86
VPS39-205ENST00000562258 CCL16O15467 120 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 PMPCBO75439 489 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 ADSSP30520 456 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 TUBB4BP68371 445 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 IRX4P78413 519 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 MCL1Q07820 350 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 CFAP157Q5JU67 520 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 FAXCQ5TGI0 409 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 SDE2Q6IQ49 451 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 PSRC1Q6PGN9 363 aaPredicted RBP9.65□□□□□ -0.86
VPS39-205ENST00000562258 ZNF677Q86XU0 584 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 ATP6V0D2Q8N8Y2 350 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 TTC13Q8NBP0 860 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 CDKL2Q92772 493 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 FUCA2Q9BTY2 467 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 B3GNT5Q9BYG0 378 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 KLC2Q9H0B6 622 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 ASAH2Q9NR71 780 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 TBC1D13Q9NVG8 400 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 TMEM161AQ9NX61 479 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 MARCH2Q9P0N8 246 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 IPO11Q9UI26 975 aaKnown RBP9.65□□□□□ -0.86
VPS39-205ENST00000562258 GOLGB1Q14789 3259 aaKnown RBP9.65□□□□□ -0.86
VPS39-205ENST00000562258 ITIH6Q6UXX5 1313 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 MYH1P12882 1939 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 FAM237AA0A1B0GTK4 181 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 PFDN6O15212 129 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 INHBAP08476 426 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 SETSIPP0DME0 302 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 DHX9Q08211 1270 aaKnown RBP9.65□□□□□ -0.86
VPS39-205ENST00000562258 NR1H3Q13133 447 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 KRT33BQ14525 404 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 NFIL3Q16649 462 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 RNF187Q5TA31 235 aaPredicted RBP9.65□□□□□ -0.86
VPS39-205ENST00000562258 E4F1Q66K89 784 aaPredicted RBP9.65□□□□□ -0.86
VPS39-205ENST00000562258 C16orf59Q7L2K0 433 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 TMEM86AQ8N2M4 240 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 PPP4R1Q8TF05 950 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 ZNF518BQ9C0D4 1074 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms