RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 TCRBV5S1A1TA0A578 114 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 CCDC66A2RUB6 948 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 CES2O00748 559 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 RNF8O76064 485 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 PROSCO94903 275 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 LCP1P13796 627 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 SYN1P17600 705 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 COMTP21964 271 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 BDNFP23560 247 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 MAN1A1P33908 653 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 RPL34P49207 117 aaKnown RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 MAP3K7CLP57077 242 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 HTRA4P83105 476 aaPredicted RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 CKAP4Q07065 602 aaKnown RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 SLC39A12Q504Y0 691 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 FAM102AQ5T9C2 384 aaPredicted RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 KIAA0319Q5VV43 1072 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 VSTM1Q6UX27 236 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 CLEC20AQ6ZU45 233 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 PIGZQ86VD9 579 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 SCUBE3Q8IX30 993 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 SIX6OS1Q8N1H7 587 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 CEP112Q8N8E3 955 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 OR10T2Q8NGX3 314 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 FNIP1Q8TF40 1166 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 C2orf15Q8WU43 125 aaKnown RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 MYLPFQ96A32 169 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 HES6Q96HZ4 224 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 FUBP3Q96I24 572 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP3-219ENST00000561326 MCEEQ96PE7 176 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 OSBPL9Q96SU4 736 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 PKMYT1Q99640 499 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 L2HGDHQ9H9P8 463 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 RC3H2Q9HBD1 1191 aaKnown RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 CSNK1G1Q9HCP0 422 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 DMAP1Q9NPF5 467 aaPredicted RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 ASNSD1Q9NWL6 643 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 CHORDC1Q9UHD1 332 aaPredicted RBP10.84□□□□□ -0.67
USP3-219ENST00000561326 SSX2IPQ9Y2D8 614 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 MRFAP1Q9Y605 127 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 GREB1Q4ZG55 1949 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 PATJQ8NI35 1801 aa10.84□□□□□ -0.67
USP3-219ENST00000561326 CCDC85CA6NKD9 419 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 KCNK3O14649 394 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 NCK2O43639 380 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 TLL1O43897 1013 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 SOD2P04179 222 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 GLI1P08151 1106 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 CPB1P15086 417 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 ATP2A2P16615 1042 aaKnown RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 PSMA2P25787 234 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 RFC1P35251 1148 aaPredicted RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 GRIK1P39086 918 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 PBX3P40426 434 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 CETN2P41208 172 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 SSR1P43307 286 aaKnown RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 GLUD2P49448 558 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 TKTL1P51854 596 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 RNASE9P60153 205 aaKnown RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 RPL7AP62424 266 aaKnown RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 AMPD2Q01433 879 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 GPR17Q13304 367 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 CFAP221Q4G0U5 840 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 PPP1R15BQ5SWA1 713 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 CCDC181Q5TID7 509 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 FAM183BPQ6ZVS7 135 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 ARCQ7LC44 396 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 TMCO2Q7Z6W1 182 aaPredicted RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 DDX53Q86TM3 631 aaKnown RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 LRRTM3Q86VH5 581 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 HERC6Q8IVU3 1022 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 GPR65Q8IYL9 337 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 SLC39A11Q8N1S5 342 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 SPPL2BQ8TCT7 592 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 PIK3R5Q8WYR1 880 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 BTBD6Q96KE9 485 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 SMOQ99835 787 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 CNPY3Q9BT09 278 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 TRIM62Q9BVG3 475 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 GOLPH3Q9H4A6 298 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 PNPLA8Q9NP80 782 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 CNGB3Q9NQW8 809 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 METTL5Q9NRN9 209 aaKnown RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 HCSTQ9UBK5 93 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 ZMYND8Q9ULU4 1186 aaPredicted RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 RWDD3Q9Y3V2 267 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 BACE2Q9Y5Z0 518 aa10.83□□□□□ -0.68
USP3-219ENST00000561326 MRPL42Q9Y6G3 142 aaKnown RBP10.83□□□□□ -0.68
USP3-219ENST00000561326 MTCL1Q9Y4B5 1905 aaKnown RBP10.82□□□□□ -0.68
USP3-219ENST00000561326 TULP2O00295 520 aa10.82□□□□□ -0.68
USP3-219ENST00000561326 PIK3R2O00459 728 aa10.82□□□□□ -0.68
USP3-219ENST00000561326 RIOK3O14730 519 aaKnown RBP10.82□□□□□ -0.68
USP3-219ENST00000561326 TRIM66O15016 1216 aa10.82□□□□□ -0.68
USP3-219ENST00000561326 FANCGO15287 622 aa10.82□□□□□ -0.68
USP3-219ENST00000561326 PAPSS1O43252 624 aaPredicted RBP10.82□□□□□ -0.68
USP3-219ENST00000561326 SLU7O95391 586 aaKnown RBP10.82□□□□□ -0.68
USP3-219ENST00000561326 EFEMP2O95967 443 aa10.82□□□□□ -0.68
USP3-219ENST00000561326 PDGFRAP16234 1089 aa10.82□□□□□ -0.68
USP3-219ENST00000561326 GPD1P21695 349 aa10.82□□□□□ -0.68
USP3-219ENST00000561326 CTNNA2P26232 953 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms