RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 TRIM60Q495X7 471 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 MDH1BQ5I0G3 518 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 CCNI2Q6ZMN8 369 aaPredicted RBP18■□□□□ 0.47
HDDC3-206ENST00000561036 PAQR9Q6ZVX9 377 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 SLC26A9Q7LBE3 791 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 IFT20Q8IY31 132 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 EIF1ADQ8N9N8 165 aaKnown RBP18■□□□□ 0.47
HDDC3-206ENST00000561036 C12orf50Q8NA57 414 aaPredicted RBP18■□□□□ 0.47
HDDC3-206ENST00000561036 MED10Q9BTT4 135 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 B3GNT5Q9BYG0 378 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 HOMER3Q9NSC5 361 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 DMGDHQ9UI17 866 aaKnown RBP18■□□□□ 0.47
HDDC3-206ENST00000561036 LRFN2Q9ULH4 789 aa18■□□□□ 0.47
HDDC3-206ENST00000561036 HTTP42858 3142 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 RAD51CO43502 376 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 GABBR2O75899 941 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 HSPA8P11142 646 aaKnown RBP17.99■□□□□ 0.47
HDDC3-206ENST00000561036 PDGFRAP16234 1089 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 BRCC3P46736 316 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 DHX34Q14147 1143 aaKnown RBP17.99■□□□□ 0.47
HDDC3-206ENST00000561036 EFHC1Q5JVL4 640 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 KIAA0319Q5VV43 1072 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 OVOS1Q6IE37 1185 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 AADACL2Q6P093 401 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 FAM171BQ6P995 826 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 ZNF280BQ86YH2 543 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 CRIPAKQ8N1N5 446 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 RXFP2Q8WXD0 754 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 RTP3Q9BQQ7 232 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 MRPL9Q9BYD2 267 aaKnown RBP17.99■□□□□ 0.47
HDDC3-206ENST00000561036 GDF3Q9NR23 364 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 TBX21Q9UL17 535 aa17.99■□□□□ 0.47
HDDC3-206ENST00000561036 TIMM13Q9Y5L4 95 aaPredicted RBP17.99■□□□□ 0.47
HDDC3-206ENST00000561036 FAM187AA6NFU0 413 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 BHMG1C9JSJ3 638 aaPredicted RBP17.98■□□□□ 0.47
HDDC3-206ENST00000561036 LRCH4O75427 683 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 SLC25A11Q02978 314 aaKnown RBP17.98■□□□□ 0.47
HDDC3-206ENST00000561036 INTS6LQ5JSJ4 861 aaKnown RBP17.98■□□□□ 0.47
HDDC3-206ENST00000561036 FAM35AQ86V20 835 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 PIGZQ86VD9 579 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 NPAS4Q8IUM7 802 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 SCUBE3Q8IX30 993 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 EMC1Q8N766 993 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 PRELID2Q8N945 189 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 HDAC7Q8WUI4 952 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.98■□□□□ 0.47
HDDC3-206ENST00000561036 KHSRPQ92945 711 aaKnown RBP eCLIP17.98■□□□□ 0.47
HDDC3-206ENST00000561036 CASD1Q96PB1 797 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 DDX47Q9H0S4 455 aaKnown RBP17.98■□□□□ 0.47
HDDC3-206ENST00000561036 PCYOX1Q9UHG3 505 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 EFR3BQ9Y2G0 817 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 TSC2P49815 1807 aa17.98■□□□□ 0.47
HDDC3-206ENST00000561036 MYBPHLA2RUH7 354 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 SYN3O14994 580 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 FBXO21O94952 628 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 HEXIM1O94992 359 aaKnown RBP17.97■□□□□ 0.47
HDDC3-206ENST00000561036 KRT1P04264 644 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 GLI1P08151 1106 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 RARAP10276 462 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 PTPN9P43378 593 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 FNTAP49354 379 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 TSPY1Q01534 308 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 SLC7A5Q01650 507 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 SIX1Q15475 284 aaPredicted RBP17.97■□□□□ 0.47
HDDC3-206ENST00000561036 ODF2Q5BJF6 829 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 BEND6Q5SZJ8 279 aaPredicted RBP17.97■□□□□ 0.47
HDDC3-206ENST00000561036 DAB2IPQ5VWQ8 1189 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 CLEC20AQ6ZU45 233 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 CCDC50Q8IVM0 306 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 ARFGAP1Q8N6T3 406 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 MAGOHBQ96A72 148 aaKnown RBP17.97■□□□□ 0.47
HDDC3-206ENST00000561036 SMARCD1Q96GM5 515 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 PCED1BQ96HM7 432 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 PKMYT1Q99640 499 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 TMEM175Q9BSA9 504 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 COLEC11Q9BWP8 271 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 OSBPL8Q9BZF1 889 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 C11orf49Q9H6J7 331 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 LRRC19Q9H756 370 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 LRRC4Q9HBW1 653 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 KRT82Q9NSB4 513 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 NR2E1Q9Y466 385 aa17.97■□□□□ 0.47
HDDC3-206ENST00000561036 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.96■□□□□ 0.47
HDDC3-206ENST00000561036 I3L4J1 428 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 PIK3R2O00459 728 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 CLDN5O00501 218 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 B4GALT3O60512 393 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 AP1G2O75843 785 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 OAZ2O95190 189 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 ITGB1P05556 798 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 LCP1P13796 627 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 SDC4P31431 198 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 CYP2C18P33260 490 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 FLT3P36888 993 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 OR1G1P47890 313 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 CCL23P55773 120 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 SMC1AQ14683 1233 aaKnown RBP17.96■□□□□ 0.47
HDDC3-206ENST00000561036 PAN2Q504Q3 1202 aaKnown RBP17.96■□□□□ 0.47
HDDC3-206ENST00000561036 CNKSR3Q6P9H4 555 aa17.96■□□□□ 0.47
HDDC3-206ENST00000561036 SCLYQ96I15 445 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms