RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MRPS21P82921 87 aaKnown RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 HSF5Q4G112 596 aaPredicted RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 C2orf27AQ580R0 203 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 TDRD10Q5VZ19 366 aaKnown RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 NAIF1Q69YI7 327 aaPredicted RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 SCARA3Q6AZY7 606 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 DDX42Q86XP3 938 aaKnown RBP eCLIP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 WDR49Q8IV35 697 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 OR5B17Q8NGF7 314 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 OR6B3Q8NGW1 331 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 MYCBPAPQ8TBZ2 947 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 USP33Q8TEY7 942 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 MYLPFQ96A32 169 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 C8orf48Q96LL4 319 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 SLITRK1Q96PX8 696 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 FNBP1Q96RU3 617 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 ZSCAN16Q9H4T2 348 aaPredicted RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 CRTAC1Q9NQ79 661 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 TBC1D14Q9P2M4 693 aa9.79□□□□□ -0.84
HDDC3-204ENST00000559834 KIF26AQ9ULI4 1882 aaPredicted RBP9.79□□□□□ -0.84
HDDC3-204ENST00000559834 GREB1Q4ZG55 1949 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 DENND4CQ5VZ89 1909 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 TSC2P49815 1807 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 C4orf47A7E2U8 309 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 K7EQS6 105 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 DCLK1O15075 740 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 EIF3DO15371 548 aaKnown RBP eCLIP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 HCRTO43612 131 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 TACC1O75410 805 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 SYT1P21579 422 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 EIF2DP41214 584 aaKnown RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 SEC13P55735 322 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 PSMC1P62191 440 aaKnown RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 SNRPFP62306 86 aaKnown RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 RESTQ13127 1097 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 BYSLQ13895 437 aaKnown RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 CRY1Q16526 586 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 PREPLQ4J6C6 727 aaPredicted RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 LMBRD2Q68DH5 695 aaPredicted RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 FAM173BQ6P4H8 233 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 NUDT18Q6ZVK8 323 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 TRAPPC11Q7Z392 1133 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 RASSF3Q86WH2 238 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 CBWD2Q8IUF1 395 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 PDILTQ8N807 584 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 RDH13Q8NBN7 331 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 KBTBD7Q8WVZ9 684 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 EZH1Q92800 747 aaPredicted RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 PCED1BQ96HM7 432 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 CNOT6LQ96LI5 555 aaKnown RBP9.78□□□□□ -0.84
HDDC3-204ENST00000559834 PNKPQ96T60 521 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 EDEM2Q9BV94 578 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 TTLL2Q9BWV7 592 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 RNF38Q9H0F5 515 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 TNMDQ9H2S6 317 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 CUEDC2Q9H467 287 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 SMOC1Q9H4F8 434 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 HSPBP1Q9NZL4 362 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 MMP17Q9ULZ9 603 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 INVSQ9Y283 1065 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 WDR87Q6ZQQ6 2873 aa9.78□□□□□ -0.84
HDDC3-204ENST00000559834 A0A0A0MRY4 1105 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 F8VP50 259 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 MAP3K13O43283 966 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 ADH1CP00326 375 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 CST3P01034 146 aaPredicted RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 APODP05090 189 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 DLATP10515 647 aaKnown RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 MBL2P11226 248 aaPredicted RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 PTPN1P18031 435 aaKnown RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 YWHAQP27348 245 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 OPRD1P41143 372 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 NOVA1P51513 510 aaKnown RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 USP46P62068 366 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 TNNC1P63316 161 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 TAF10Q12962 218 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 TRPC3Q13507 836 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 STK38Q15208 465 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 DHCR24Q15392 516 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 SNRNP35Q16560 246 aaKnown RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 CCDC142Q17RM4 750 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 WDR72Q3MJ13 1102 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 MDH1BQ5I0G3 518 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 EOGTQ5NDL2 527 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 PMS2CLQ68D20 193 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 TCEAL6Q6IPX3 200 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 ANO7Q6IWH7 933 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 PSAPL1Q6NUJ1 521 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 LPCAT2Q7L5N7 544 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 FILIP1Q7Z7B0 1213 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 TTC30AQ86WT1 665 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 CCDC33Q8N5R6 958 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 IQUBQ8NA54 791 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 PDZD8Q8NEN9 1154 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 ZNF507Q8TCN5 953 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 TCEAL3Q969E4 200 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 OTUB2Q96DC9 234 aa9.77□□□□□ -0.85
HDDC3-204ENST00000559834 INTS4Q96HW7 963 aaKnown RBP9.77□□□□□ -0.85
HDDC3-204ENST00000559834 FAM84AQ96KN4 292 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 234.9 ms