RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SPATA31D4Q6ZUB0 917 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 IRF2BP2Q7Z5L9 587 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 NUP93Q8N1F7 819 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 SLC7A14Q8TBB6 771 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 STK32AQ8WU08 396 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 TFAP2BQ92481 460 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 DNAJC7Q99615 494 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 RHOBTB2Q9BYZ6 727 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 PRKD2Q9BZL6 878 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 FBXO44Q9H4M3 255 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 LRRC4Q9HBW1 653 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 CSNK1G1Q9HCP0 422 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 KRT82Q9NSB4 513 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 CLDND1Q9NY35 253 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 YIPF1Q9Y548 306 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 TTC28Q96AY4 2481 aa9.76□□□□□ -0.85
LDLR-210ENST00000559340 C2orf16Q68DN1 1984 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 LAMA2P24043 3122 aaKnown RBP9.75□□□□□ -0.85
LDLR-210ENST00000559340 TRANK1O15050 2925 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 CCDC195A0A1B0GUA6 201 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 F8VP50 259 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 ZNF197O14709 1029 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 PNMA6AP0CW24 399 aaPredicted RBP9.75□□□□□ -0.85
LDLR-210ENST00000559340 PLA2G4AP47712 749 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 PPP3CCP48454 512 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 ADKP55263 362 aaKnown RBP9.75□□□□□ -0.85
LDLR-210ENST00000559340 MAP3K7CLP57077 242 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 MRPS5P82675 430 aaKnown RBP9.75□□□□□ -0.85
LDLR-210ENST00000559340 CDK17Q00537 523 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 ITIH3Q06033 890 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 TWF1Q12792 350 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 KCNC3Q14003 757 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 ARID5BQ14865 1188 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 PABPC1LQ4VXU2 614 aaKnown RBP9.75□□□□□ -0.85
LDLR-210ENST00000559340 ATAT1Q5SQI0 421 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 CYP4A22Q5TCH4 519 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 CLEC20AQ6ZU45 233 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 DENND5BQ6ZUT9 1274 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 PAQR9Q6ZVX9 377 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 SPC24Q8NBT2 197 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 VN1R2Q8NFZ6 395 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 UBA3Q8TBC4 463 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 EPS8L1Q8TE68 723 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 IPO4Q8TEX9 1081 aaKnown RBP9.75□□□□□ -0.85
LDLR-210ENST00000559340 KCTD13Q8WZ19 329 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 ASB2Q96Q27 587 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 GCNAQ96QF7 691 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 PANX2Q96RD6 677 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 LPIN3Q9BQK8 851 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 DEF6Q9H4E7 631 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 HAUS4Q9H6D7 363 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 ABHD10Q9NUJ1 306 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 SEPT11Q9NVA2 429 aaKnown RBP9.75□□□□□ -0.85
LDLR-210ENST00000559340 ZMYM5Q9UJ78 669 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 COG5Q9UP83 839 aa9.75□□□□□ -0.85
LDLR-210ENST00000559340 CHD9Q3L8U1 2897 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 SSU72P8A0A1W2PR75 194 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 SLC38A8A6NNN8 435 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 SART1O43290 800 aaKnown RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 FBXO21O94952 628 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 PAPLNO95428 1278 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 VNN2O95498 520 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 GZMAP12544 262 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 YWHAQP27348 245 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 CDH5P33151 784 aaPredicted RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 MTHFRP42898 656 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 GPD2P43304 727 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 PDE4CQ08493 712 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 COL19A1Q14993 1142 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 CCDC85BQ15834 202 aaPredicted RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 DDR2Q16832 855 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 CTC1Q2NKJ3 1217 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 PUS10Q3MIT2 529 aaKnown RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 PKDCCQ504Y2 493 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 TAF3Q5VWG9 929 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 DNAJB7Q7Z6W7 309 aaPredicted RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 NOP9Q86U38 636 aaKnown RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 ERICH1Q86X53 443 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 TMTC1Q8IUR5 882 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 SIX6OS1Q8N1H7 587 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 ARHGAP18Q8N392 663 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 PDZD8Q8NEN9 1154 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 GIPC2Q8TF65 315 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 SLC35F5Q8WV83 523 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 PPM1EQ8WY54 764 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 DDX1Q92499 740 aaKnown RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 SMG7Q92540 1137 aaKnown RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 SECISBP2LQ93073 1101 aaKnown RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 PSMG2Q969U7 264 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 CCDC42Q96M95 316 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 RIPOR3Q96MK2 946 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 NECTIN4Q96NY8 510 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 SLITRK1Q96PX8 696 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 SMOQ99835 787 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.74□□□□□ -0.85
LDLR-210ENST00000559340 SYNCQ9H7C4 482 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 LUC7LQ9NQ29 371 aaKnown RBP9.74□□□□□ -0.85
LDLR-210ENST00000559340 ASAH2Q9NR71 780 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 ST7Q9NRC1 585 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 NOCTQ9UK39 431 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms