RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CROCCP2Q86T23 111 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ZNF473Q8WTR7 871 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 MRPL45Q9BRJ2 306 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 SLC4A5Q9BY07 1137 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 RNF39Q9H2S5 420 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 MTRF1LQ9UGC7 380 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 USTQ9Y2C2 406 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 GOLGA8SH3BPF8 625 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 PPP1R12AO14974 1030 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ELNP15502 786 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 LHX1P48742 406 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ZNF143P52747 638 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ACLYP53396 1101 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 TAS2R40P59535 323 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 LILRA4P59901 499 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CAV1Q03135 178 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 TRIM32Q13049 653 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 KLF1Q13351 362 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 SIX1Q15475 284 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ZFYVE27Q5T4F4 411 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 FAM102AQ5T9C2 384 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 AGBL2Q5U5Z8 902 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 FBXW10Q5XX13 1052 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 LLGL2Q6P1M3 1020 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 DRICH1Q6PGQ1 229 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CEP128Q6ZU80 1094 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 PHLDB2Q86SQ0 1253 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 TMEM110Q86TL2 294 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 NLRP14Q86W24 1093 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 GSPT2Q8IYD1 628 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ADGRF2Q8IZF7 708 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ANKRD52Q8NB46 1076 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 TTC13Q8NBP0 860 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ARRDC4Q8NCT1 418 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 BBOF1Q8ND07 529 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ATL2Q8NHH9 583 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 PPP1R13LQ8WUF5 828 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 RIN2Q8WYP3 895 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 SGSM3Q96HU1 749 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 HSFY1Q96LI6 401 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 UROC1Q96N76 676 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CNPY3Q9BT09 278 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 METTL5Q9NRN9 209 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 SAGE1Q9NXZ1 904 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 KLK14Q9P0G3 267 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CYTH4Q9UIA0 394 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 THSD7BQ9C0I4 1608 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 ESYT3A0FGR9 886 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 DPYSL4O14531 572 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 PTGESO14684 152 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 PPEF2O14830 753 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 TRPA1O75762 1119 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 GSTA1P08263 222 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 CTSHP09668 335 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 RFC1P35251 1148 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-229ENST00000557348 PTGIRP43119 386 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 ZNF252P-AS1Q0IIN9 211 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 TTMPQ5BVD1 217 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 TFDP3Q5H9I0 405 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 PPP1R26Q5T8A7 1209 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-229ENST00000557348 ADAT2Q7Z6V5 191 aaKnown RBP13.27□□□□□ -0.29
SHMT2-229ENST00000557348 ACOT1Q86TX2 421 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 VSIG1Q86XK7 387 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 MYCBPAPQ8TBZ2 947 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 CD99L2Q8TCZ2 262 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 CENPTQ96BT3 561 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 MIEF2Q96C03 454 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 ANKRD27Q96NW4 1050 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 ZIM3Q96PE6 472 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 CCT8L2Q96SF2 557 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 FMO2Q99518 471 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 DCLK3Q9C098 648 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 TSPYL2Q9H2G4 693 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-229ENST00000557348 KDM4CQ9H3R0 1056 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 CNOT10Q9H9A5 744 aaKnown RBP13.27□□□□□ -0.29
SHMT2-229ENST00000557348 HMX1Q9NP08 348 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-229ENST00000557348 PADI3Q9ULW8 664 aa13.27□□□□□ -0.29
SHMT2-229ENST00000557348 PDCD11Q14690 1871 aaKnown RBP13.26□□□□□ -0.29
SHMT2-229ENST00000557348 A0A0U1RQF3 1178 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 ZSCAN5CA6NGD5 496 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-229ENST00000557348 F8VP50 259 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 DAPK3O43293 454 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 FKTNO75072 461 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 DNAJC8O75937 253 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-229ENST00000557348 RALAP11233 206 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 GPD1P21695 349 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 RPL34P49207 117 aaKnown RBP13.26□□□□□ -0.29
SHMT2-229ENST00000557348 IRX1P78414 480 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-229ENST00000557348 MRPS25P82663 173 aaKnown RBP13.26□□□□□ -0.29
SHMT2-229ENST00000557348 CALCOCO2Q13137 446 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 ORC1Q13415 861 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 XRCC4Q13426 336 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 RIPK1Q13546 671 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 PPP1R7Q15435 360 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 OR6B2Q6IFH4 312 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 AADACL2Q6P093 401 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 SLC35F5Q8WV83 523 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 KBTBD7Q8WVZ9 684 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 SLITRK1Q96PX8 696 aa13.26□□□□□ -0.29
SHMT2-229ENST00000557348 TBCBQ99426 244 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms