RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 ARHGAP6O43182 974 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 GAS7O60861 476 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 MED24O75448 989 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 PSMD10O75832 226 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 TOMM70O94826 608 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 DDNO94850 711 aaPredicted RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 SLITRK3O94933 977 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 EYA4O95677 639 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 ALAS1P13196 640 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 GAP43P17677 238 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 VCAM1P19320 739 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 NF2P35240 595 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 STAT3P40763 770 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 DNM2P50570 870 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 COPB1P53618 953 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 FKBP3Q00688 224 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 UBXN1Q04323 297 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 SPIRE1Q08AE8 756 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 PPP2R5CQ13362 524 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 TRIM14Q14142 442 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 USP10Q14694 798 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 KRT31Q15323 416 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 PTPN14Q15678 1187 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 HSP90AA4PQ58FG1 418 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 FKBP15Q5T1M5 1219 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 LRCH2Q5VUJ6 765 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 TTI2Q6NXR4 508 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 KCNT2Q6UVM3 1135 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CATSPERGQ6ZRH7 1159 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 USP50Q70EL3 339 aaPredicted RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 OTOP3Q7RTS5 596 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 APTXQ7Z2E3 356 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 GPBP1Q86WP2 473 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CREBRFQ8IUR6 639 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CNGA4Q8IV77 575 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 TPH2Q8IWU9 490 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 TRIM48Q8IWZ4 208 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CCAR2Q8N163 923 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 MB21D1Q8N884 522 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CYP2W1Q8TAV3 490 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 NEK9Q8TD19 979 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 NSUN6Q8TEA1 469 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 DNAJC19Q96DA6 116 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CCDC140Q96MF4 163 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 BAG1Q99933 345 aaPredicted RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 EIF2AK1Q9BQI3 630 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 TEKT3Q9BXF9 490 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CD244Q9BZW8 370 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 RAVER2Q9HCJ3 691 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 GGA3Q9NZ52 723 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 SCAF8Q9UPN6 1271 aaKnown RBP4.89□□□□□ -1.63
SRP54-212ENST00000556992 AFG3L2Q9Y4W6 797 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 COL4A3BPQ9Y5P4 624 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 UBIAD1Q9Y5Z9 338 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 ITIH6Q6UXX5 1313 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 MYPNQ86TC9 1320 aa4.89□□□□□ -1.63
SRP54-212ENST00000556992 CHD4Q14839 1912 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 BLACEA4D250 179 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 GOLGA6L9A6NEM1 432 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 UNCXA6NJT0 531 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 ZNF839A8K0R7 811 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 LGALS16A8MUM7 142 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 B4DLN1 442 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 ACOT7O00154 380 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 TEX33O43247 280 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 DLX3O60479 287 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 CDC14BO60729 498 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 TBCAO75347 108 aaKnown RBP4.88□□□□□ -1.63
SRP54-212ENST00000556992 STAM2O75886 525 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 CAPNS1P04632 268 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 ARP10275 920 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 GNAT1P11488 350 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 FCER1AP12319 257 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 CYP11B2P19099 503 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 GRK2P25098 689 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 SFNP31947 248 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 GRK3P35626 688 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 PBX1P40424 430 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 MTIF2P46199 727 aaKnown RBP4.88□□□□□ -1.63
SRP54-212ENST00000556992 HMGCS2P54868 508 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 SLC12A3P55017 1021 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 RAC3P60763 192 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 CCZ1BP86790 482 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 CCZ1P86791 482 aaPredicted RBP4.88□□□□□ -1.63
SRP54-212ENST00000556992 PPATQ06203 517 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 RBL2Q08999 1139 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 GIT2Q14161 759 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 SMN1Q16637 294 aaKnown RBP4.88□□□□□ -1.63
SRP54-212ENST00000556992 SLC10A6Q3KNW5 377 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 TMCO4Q5TGY1 634 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 ARHGEF16Q5VV41 709 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 CYP4F22Q6NT55 531 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 STXBP4Q6ZWJ1 553 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 KCNK18Q7Z418 384 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 TMTC1Q8IUR5 882 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 C1orf210Q8IVY1 113 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 ZNF397Q8NF99 534 aaPredicted RBP4.88□□□□□ -1.63
SRP54-212ENST00000556992 OR8K1Q8NGG5 319 aa4.88□□□□□ -1.63
SRP54-212ENST00000556992 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.88□□□□□ -1.63
SRP54-212ENST00000556992 IL17DQ8TAD2 202 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms