RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 TAC1P20366 129 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 TGFB2P61812 414 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 PTPN11Q06124 597 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 GOLGA7BQ2TAP0 167 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 C6orf89Q6UWU4 347 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 SDCCAG8Q86SQ7 713 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 FAM131BQ86XD5 332 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ZCCHC9Q8N567 271 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 TTC13Q8NBP0 860 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 CLMNQ96JQ2 1002 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 SYT11Q9BT88 431 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 RXFP1Q9HBX9 757 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 NHSL1Q5SYE7 1610 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 BTAF1O14981 1849 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 TCRBV7S3A2A0A539 114 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ATP9BO43861 1147 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 MMP8P22894 467 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 SERPINB3P29508 390 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 TFDP2Q14188 446 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 TMEM132DQ14C87 1099 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 NBPF20Q3BBV1 942 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 FNBP1LQ5T0N5 605 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 JADE1Q6IE81 842 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 BRSK2Q8IWQ3 736 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ZNF75CPQ92670 426 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 CD101Q93033 1021 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 B3GNT5Q9BYG0 378 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ACSS2Q9NR19 701 aa12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ZNF214Q9UL59 606 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-211ENST00000556726 ABCA3Q99758 1704 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 A0A0B4J269 797 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 TMEM191CA6NGB0 347 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 MYL2P10916 166 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SERPINB6P35237 376 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 NDST1P52848 882 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 PLCB4Q15147 1175 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 RAPH1Q70E73 1250 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 RDM1Q8NG50 284 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 hCG_1818297A0A087WSY0 165 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 CFLARO15519 480 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 RASSF9O75901 435 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 LYPLA2O95372 231 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 RBL1P28749 1068 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SLC8A3P57103 927 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 CHI3L2Q15782 390 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 TMEM63BQ5T3F8 832 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 IER5Q5VY09 327 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 C16orf46Q6P387 395 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SMC1BQ8NDV3 1235 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 FAM172AQ8WUF8 416 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SCYL1Q96KG9 808 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SPATC1LQ9H0A9 340 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SNX25Q9H3E2 840 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SMG5Q9UPR3 1016 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 C19orf81C9J6K1 198 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 IRF6O14896 467 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 USP12O75317 370 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 CYP2C8P10632 490 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 INSRRP14616 1297 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 ARL4AP40617 200 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 NR1H3Q13133 447 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 MXD4Q14582 209 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 MORF4L2Q15014 288 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 SIX1Q15475 284 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 CENPTQ96BT3 561 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 TSNARE1Q96NA8 513 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 THTPAQ9BU02 230 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 HAPLN2Q9GZV7 340 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 IFT122Q9HBG6 1241 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 TSPAN16Q9UKR8 245 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 COQ4Q9Y3A0 265 aa12.68□□□□□ -0.38
CCDC88C-211ENST00000556726 B2RBV5 119 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 MICAL2O94851 1124 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 HMGCRP04035 888 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 GPD1P21695 349 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 ARL1P40616 181 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 VGLL4Q14135 290 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 RAB6CQ53S08 254 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 HEATR6Q6AI08 1181 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 MPZL3Q6UWV2 235 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 DENND5BQ6ZUT9 1274 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 TRABD2AQ86V40 505 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 C3orf20Q8ND61 904 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 TTC8Q8TAM2 541 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 ADAM32Q8TC27 787 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 C7orf43Q8WVR3 580 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 FAM167AQ96KS9 214 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 RAB6CQ9H0N0 254 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 APOL1O14791 398 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 TBC1D12O60347 775 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 ASS1P00966 412 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 RARBP10826 455 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 OSBPP22059 807 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 PAX7P23759 505 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 KDELR1P24390 212 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 AKAP5P24588 427 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 WDR49Q8IV35 697 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 ALLCQ8N6M5 410 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 USP33Q8TEY7 942 aa12.67□□□□□ -0.38
CCDC88C-211ENST00000556726 NDRG1Q92597 394 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms