RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 TTC39BQ5VTQ0 682 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 TSPAN14Q8NG11 270 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 GFM2Q969S9 779 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CLCC1Q96S66 551 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 KCTD14Q9BQ13 255 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 FOXP3Q9BZS1 431 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 PSMC3IPQ9P2W1 217 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 HACL1Q9UJ83 578 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 OTUD4Q01804 1114 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ZNF284Q2VY69 593 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 LRRC49Q8IUZ0 686 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ATP6V1G3Q96LB4 118 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CLPBQ9H078 707 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CYP4F12Q9HCS2 524 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 VPS9D1Q9Y2B5 631 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 MRPL42Q9Y6G3 142 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CFAP73A6NFT4 308 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 SMIM22K7EJ46 135 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 SP100P23497 879 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 NMT1P30419 496 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 EFEMP1Q12805 493 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 FNDC3BQ53EP0 1204 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 UGT3A1Q6NUS8 523 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 OXER1Q8TDS5 423 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ZNF333Q96JL9 665 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 DBR1Q9UK59 544 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 LYVE1Q9Y5Y7 322 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 NCAPD2Q15021 1401 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 MYH6P13533 1939 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 GRXCR2A6NFK2 248 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 HMGB3O15347 200 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 AP1G2O75843 785 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 MAPK11Q15759 364 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 QRICH1Q2TAL8 776 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ATAD3BQ5T9A4 648 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 TAF8Q7Z7C8 310 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 TFB1MQ8WVM0 346 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ACSF2Q96CM8 615 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CMTM5Q96DZ9 223 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 GRID2IPA4D2P6 1211 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 RRN3P2A6NIE6 340 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 FAM25EA8MYX2 175 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 HIST1H2ABP04908 130 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 IL6P05231 212 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 PPP2R1BP30154 601 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 DAB2IPQ5VWQ8 1189 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 FBXO38Q6PIJ6 1188 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 AGMOQ6ZNB7 445 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 HIST3H2AQ7L7L0 130 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 SPATA21Q7Z572 469 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 KRT73Q86Y46 540 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 HIST1H2ACQ93077 130 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 BBS4Q96RK4 519 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 PLA2G4CQ9UP65 541 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 HPS5Q9UPZ3 1129 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 FAM135BQ49AJ0 1406 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ASXL3Q9C0F0 2248 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 TRPC5OSA6NMA1 111 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 C2orf81A6NN90 581 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 GUCY1B2O75343 617 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 HNMTP50135 292 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 SRSF11Q05519 484 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ATF7IP2Q5U623 682 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ZNF671Q8TAW3 534 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 SENP7Q9BQF6 1050 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CNGB3Q9NQW8 809 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 TUBGCP4Q9UGJ1 667 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 AP3B1O00203 1094 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 SPRP35270 261 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 STXBP1P61764 594 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 ORC1Q13415 861 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 MRPS31Q92665 395 aaKnown RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 PPP1R2P1Q96PQ5 205 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CDY2AQ9Y6F7 541 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CDY1Q9Y6F8 540 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 PP2D1A8MPX8 630 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 STXBP3O00186 592 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 IFRD1O00458 451 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-216ENST00000555002 NECAB2Q7Z6G3 386 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 TMEM47Q9BQJ4 181 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 TUFT1Q9NNX1 390 aa7.12□□□□□ -1.27
SYNE2-216ENST00000555002 CHN1P15882 459 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 ARID5BQ14865 1188 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 PLA2G4FQ68DD2 849 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 EFL1Q7Z2Z2 1120 aaKnown RBP7.11□□□□□ -1.27
SYNE2-216ENST00000555002 FAM228AQ86W67 206 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 DSELQ8IZU8 1212 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 CALR3Q96L12 384 aaKnown RBP7.11□□□□□ -1.27
SYNE2-216ENST00000555002 KCNK16Q96T55 309 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 KCTD10Q9H3F6 313 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 TRIM39Q9HCM9 518 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 METTL5Q9NRN9 209 aaKnown RBP7.11□□□□□ -1.27
SYNE2-216ENST00000555002 ING3Q9NXR8 418 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 PALLDQ8WX93 1383 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 HALP42357 657 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 ATP6V0D2Q8N8Y2 350 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 RBM15Q96T37 977 aaKnown RBP eCLIP7.11□□□□□ -1.27
SYNE2-216ENST00000555002 PACSIN1Q9BY11 444 aa7.11□□□□□ -1.27
SYNE2-216ENST00000555002 CD4P01730 458 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms