RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TSPAN1O60635 241 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 MYBL1P10243 752 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 AMPD1P23109 780 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 KDELR1P24390 212 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 FNTAP49354 379 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 GTF2A2P52657 109 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CORO7P57737 925 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 RBP5P82980 135 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 C1QBPQ07021 282 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 BMPR2Q13873 1038 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 GNASQ5JWF2 1037 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 HIBCHQ6NVY1 386 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ZNF449Q6P9G9 518 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TRIM72Q6ZMU5 477 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PHF13Q86YI8 300 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TEX2Q8IWB9 1127 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 C2orf69Q8N8R5 385 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 EXD1Q8NHP7 514 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SLC2A14Q8TDB8 520 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 KAT2BQ92831 832 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PEBP4Q96S96 227 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SLC13A1Q9BZW2 595 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 AVENQ9NQS1 362 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ACSS2Q9NR19 701 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ABCF3Q9NUQ8 709 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SLC17A6Q9P2U8 582 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SLC12A6Q9UHW9 1150 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PNMA3Q9UL41 463 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TNFSF13BQ9Y275 285 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PPP2R3BQ9Y5P8 575 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SNX10Q9Y5X0 201 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 STYXL1Q9Y6J8 313 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ZNFX1Q9P2E3 1918 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 hCG_1818297A0A087WSY0 165 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 USP12O75317 370 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 FAM107AO95990 144 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 IVDP26440 423 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 RBL1P28749 1068 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 RPL22P35268 128 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 GRIA1P42261 906 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 BCAR1P56945 870 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SESN2P58004 480 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CCNG2Q16589 344 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 DCAF6Q58WW2 860 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TFDP3Q5H9I0 405 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 FNBP1LQ5T0N5 605 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 HHATQ5VTY9 493 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TSHZ1Q6ZSZ6 1077 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 RFX8Q6ZV50 586 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PLPPR4Q7Z2D5 763 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 PLEKHH3Q7Z736 793 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ZNF677Q86XU0 584 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 XYLT1Q86Y38 959 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC125Q86Z20 511 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TP53INP2Q8IXH6 220 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC63Q8NA47 563 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 CCDC197Q8NCU1 140 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 FBXO36Q8NEA4 188 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 USP33Q8TEY7 942 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 EDEM1Q92611 657 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 P3H4Q92791 437 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 KHSRPQ92945 711 aaKnown RBP eCLIP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TTC17Q96AE7 1141 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 FAM81BQ96LP2 452 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ZIC5Q96T25 663 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TACO1Q9BSH4 297 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 RHOBTB2Q9BYZ6 727 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 SNX25Q9H3E2 840 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 XPO7Q9UIA9 1087 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 TPX2Q9ULW0 747 aaKnown RBP5.86□□□□□ -1.47
LIMA1-215ENST00000552823 IKBKGQ9Y6K9 419 aa5.86□□□□□ -1.47
LIMA1-215ENST00000552823 ABLIM1O14639 778 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 CAPN9O14815 690 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 ASAP2O43150 1006 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MED7O43513 233 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TRAPPC3O43617 180 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 ZBED1O96006 694 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 POMCP01189 267 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 SMIM10L2AP0DMW4 78 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 SMIM10L2BP0DMW5 78 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 KITP10721 976 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 GPD1P21695 349 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 SDC4P31431 198 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 EIF3BP55884 814 aaKnown RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 ARPP19P56211 112 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 HIC1Q14526 733 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 DGKDQ16760 1214 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 AGBL2Q5U5Z8 902 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 OLFML2BQ68BL8 750 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TRNP1Q6NT89 227 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 CD302Q8IX05 232 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 UNC5BQ8IZJ1 945 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 PLCD3Q8N3E9 789 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MORC4Q8TE76 937 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 FBXO41Q8TF61 875 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MAIP1Q8WWC4 291 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 RNF34Q969K3 372 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 RUNDC3BQ96NL0 473 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TGS1Q96RS0 853 aaKnown RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 GAD1Q99259 594 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms