RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 KRT82Q9NSB4 513 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FETUBQ9UGM5 382 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 AGO2Q9UKV8 859 aaKnown RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ASB3Q9Y575 518 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 SCINQ9Y6U3 715 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CNTNAP2Q9UHC6 1331 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FAM237BA0A1B0GVD1 139 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 E7ESA3 106 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 SOCS7O14512 581 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CCDC22O60826 627 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FAM155BO75949 473 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 PSMG1O95456 288 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 NPTXRO95502 500 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FESP07332 822 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TROVE2P10155 538 aaKnown RBP eCLIP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 GNAT1P11488 350 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CHRNA5P30532 468 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 VHLP40337 213 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 LIG4P49917 911 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 NEK3P51956 506 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ARFIP2P53365 341 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ARL4CP56559 192 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 MXRA7P84157 204 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 KRT76Q01546 638 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 MCL1Q07820 350 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FAAP100Q0VG06 881 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 RCN2Q14257 317 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 LBRQ14739 615 aaKnown RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 PRKD1Q15139 912 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TAF5Q15542 800 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 SGSM1Q2NKQ1 1148 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TSNAXIP1Q2TAA8 658 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 NBPF20Q3BBV1 942 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 BBS9Q3SYG4 887 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 PPP1R2P3Q6NXS1 205 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TREML1Q86YW5 311 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM130Q8N3G9 435 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ATP11CQ8NB49 1132 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 JOSD2Q8TAC2 188 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZNF526Q8TF50 670 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TEKT4Q8WW24 435 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TFAP2BQ92481 460 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TMEM143Q96AN5 459 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 NSL1Q96IY1 281 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 FAM111AQ96PZ2 611 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 TSSK1BQ9BXA7 367 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 NMUR2Q9GZQ4 415 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 VPS11Q9H270 941 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 ZWILCHQ9H900 591 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 GINM1Q9NU53 330 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CNTN3Q9P232 1028 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 SEPT9Q9UHD8 586 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CYTH4Q9UIA0 394 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 CHMP2BQ9UQN3 213 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 RIPK3Q9Y572 518 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 PCDHA10Q9Y5I2 948 aa5.68□□□□□ -1.5
LIMA1-212ENST00000552491 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.68□□□□□ -1.5
LIMA1-212ENST00000552491 GYG2O15488 501 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CST8O60676 142 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 DNAJC6O75061 913 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 AVILO75366 819 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 C1QAP02745 245 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 RARBP10826 455 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 MYL2P10916 166 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PTPN7P35236 360 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 RFC1P35251 1148 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TNFSF9P41273 254 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CDK16Q00536 496 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 OCRLQ01968 901 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SLC25A11Q02978 314 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 FER1L6Q2WGJ9 1857 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 MDH1BQ5I0G3 518 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SLC27A3Q5K4L6 730 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 LRRC38Q5VT99 294 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 DNAJC24Q6P3W2 148 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 DCUN1D2Q6PH85 259 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 LRRC74BQ6ZQY2 392 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PRPF39Q86UA1 669 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PPIL6Q8IXY8 311 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SCYL3Q8IZE3 742 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TTC17Q96AE7 1141 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CLPTM1LQ96KA5 538 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 MECRQ9BV79 373 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TARS2Q9BW92 718 aaKnown RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TRIM55Q9BYV6 548 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PRKD2Q9BZL6 878 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 C17orf75Q9HAS0 396 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 SLC38A10Q9HBR0 1119 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 CYP26B1Q9NR63 512 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 RBAKQ9NYW8 714 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-212ENST00000552491 STOML1Q9UBI4 398 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PGAP2Q9UHJ9 254 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TCEAL9Q9UHQ7 104 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 C2CD2Q9Y426 696 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 STYXL1Q9Y6J8 313 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 PCNTO95613 3336 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 MGAMO43451 1857 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TCRBV9S1A1TA0A576 114 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 FCHO1O14526 889 aa5.67□□□□□ -1.5
LIMA1-212ENST00000552491 TM9SF1O15321 606 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms