RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 IFNAR2P48551 515 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 LIG4P49917 911 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 SEC13P55735 322 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 ZNF268Q14587 947 aaPredicted RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 ZRSR1Q15695 479 aaKnown RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 ZNF77Q15935 545 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 IL17AQ16552 155 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 KYAT1Q16773 422 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 C2orf27AQ580R0 203 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 TRIM61Q5EBN2 209 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 SDHAF4Q5VUM1 108 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 ARMCX6Q7L4S7 300 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 RASSF3Q86WH2 238 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 TTC30AQ86WT1 665 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 METTL23Q86XA0 190 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 THEM5Q8N1Q8 247 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 MDGA1Q8NFP4 955 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 USP33Q8TEY7 942 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 C2orf15Q8WU43 125 aaKnown RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 OSCP1Q8WVF1 389 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 C8orf76Q96K31 380 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 CNOT6LQ96LI5 555 aaKnown RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 PYM1Q9BRP8 204 aaKnown RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 PI4K2AQ9BTU6 479 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 MMTAG2Q9BU76 263 aaKnown RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 RAB34Q9BZG1 259 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 FOXP1Q9H334 677 aaPredicted RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 SLC32A1Q9H598 525 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 TRPC7Q9HCX4 862 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 TMLHEQ9NVH6 421 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 EVLQ9UI08 416 aaPredicted RBP11.31□□□□□ -0.6
VPS29-208ENST00000550267 DSEQ9UL01 958 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 LAMA1P25391 3075 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 SPAG17Q6Q759 2223 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 KIAA1549LQ6ZVL6 1849 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 SDK1Q7Z5N4 2213 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 NPHP3-ACAD11A0A0J9YXS1 232 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 K7EQS6 105 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 CSH1P0DML2 217 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 CSH2P0DML3 217 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 HNRNPLP14866 589 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS29-208ENST00000550267 ENGP17813 658 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 NCKAP1LP55160 1127 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 FAM160A1Q05DH4 1040 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 LMAN2Q12907 356 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 USP4Q13107 963 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 CBLBQ13191 982 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 TMEM132DQ14C87 1099 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 EML3Q32P44 896 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 WSCD1Q658N2 575 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 DCP1BQ8IZD4 617 aaKnown RBP11.3□□□□□ -0.6
VPS29-208ENST00000550267 CCDC33Q8N5R6 958 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 FRMD1Q8N878 549 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 RLN3Q8WXF3 142 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 ATP2A3Q93084 1043 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 SLC22A12Q96S37 553 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 TSPAN18Q96SJ8 248 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 CYP2S1Q96SQ9 504 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 NUSAP1Q9BXS6 441 aaKnown RBP11.3□□□□□ -0.6
VPS29-208ENST00000550267 TMEM74BQ9NUR3 256 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 KCNG1Q9UIX4 513 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 NOL7Q9UMY1 257 aaKnown RBP11.3□□□□□ -0.6
VPS29-208ENST00000550267 PCDHB5Q9Y5E4 795 aa11.3□□□□□ -0.6
VPS29-208ENST00000550267 ATXN2Q99700 1313 aaKnown RBP11.3□□□□□ -0.6
VPS29-208ENST00000550267 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 FIGNL2A6NMB9 653 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 HNRNPDLO14979 420 aaKnown RBP11.29□□□□□ -0.6
VPS29-208ENST00000550267 PRPF40AO75400 957 aaKnown RBP11.29□□□□□ -0.6
VPS29-208ENST00000550267 CKMP06732 381 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 USP17L7P0C7H9 530 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 OPRD1P41143 372 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 TRAPPC10P48553 1259 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 TAF6P49848 677 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 ANAPC15P60006 121 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 SIM1P81133 766 aaPredicted RBP11.29□□□□□ -0.6
VPS29-208ENST00000550267 SMARCB1Q12824 385 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 GNL2Q13823 731 aaKnown RBP11.29□□□□□ -0.6
VPS29-208ENST00000550267 DDR2Q16832 855 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 ZC2HC1CQ53FD0 456 aaPredicted RBP11.29□□□□□ -0.6
VPS29-208ENST00000550267 PIP4P1Q86T03 277 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 CD302Q8IX05 232 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 EFCAB13Q8IY85 973 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 TMEFF1Q8IYR6 380 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 KCTD17Q8N5Z5 321 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 SYT2Q8N9I0 419 aaPredicted RBP11.29□□□□□ -0.6
VPS29-208ENST00000550267 OLIG1Q8TAK6 271 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 PNMA5Q96PV4 448 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 PLIN2Q99541 437 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 MSTO1Q9BUK6 570 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 LINC00597Q9H2U6 94 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 FSCN3Q9NQT6 498 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 CPSF3Q9UKF6 684 aaKnown RBP11.29□□□□□ -0.6
VPS29-208ENST00000550267 MMP17Q9ULZ9 603 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 PCDHB6Q9Y5E3 794 aa11.29□□□□□ -0.6
VPS29-208ENST00000550267 AKAP13Q12802 2813 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 MYO16Q9Y6X6 1858 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 TRAV19A0A0A6YYK7 116 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 A0A0B4J269 797 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 TNFRSF10BO14763 440 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 NOL4O94818 638 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms