RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 LRIG3Q6UXM1 1119 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 DLK2Q6UY11 383 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 NSUN4Q96CB9 384 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CFAP36Q96G28 342 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CEP95Q96GE4 821 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PRMT6Q96LA8 375 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 C11orf70Q9BRQ4 267 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 LGR4Q9BXB1 951 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 TRABDQ9H4I3 376 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 DNAJB12Q9NXW2 375 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 BARHL2Q9NY43 387 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 NOP56O00567 594 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CYP26A1O43174 497 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CYTH3O43739 400 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ORC4O43929 436 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 SNUPNO95149 360 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 MAP3K6O95382 1288 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 KRT1P04264 644 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 SERPINB3P29508 390 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ECHS1P30084 290 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 NRLP54845 237 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 GPC5P78333 572 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 GPLD1P80108 840 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PDIA2Q13087 525 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ITGB3BPQ13352 177 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 THOC5Q13769 683 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CYTH1Q15438 398 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 FXNQ16595 210 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 TRIML2Q8N7C3 387 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 OLIG1Q8TAK6 271 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF564Q8TBZ8 553 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 MAIP1Q8WWC4 291 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 BSNDQ8WZ55 320 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CAVIN3Q969G5 261 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CENPKQ9BS16 269 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 THAP2Q9H0W7 228 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 XAB2Q9HCS7 855 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 C1orf112Q9NSG2 853 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 WDR81Q562E7 1941 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 F8VZ95 297 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 HNRNPDLO14979 420 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 BPNT1O95861 308 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 COMTP21964 271 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CHRNA3P32297 505 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CASP4P49662 377 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 TRPC3Q13507 836 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PLCB4Q15147 1175 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 IZUMO3Q5VZ72 239 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 SLFN13Q68D06 897 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 LMBRD2Q68DH5 695 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 FAM43BQ6ZT52 329 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF571Q7Z3V5 609 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 DGKHQ86XP1 1220 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 RASAL3Q86YV0 1011 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 IQCKQ8N0W5 287 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 SLC25A41Q8N5S1 370 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PPM1NQ8N819 430 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PPP4R1Q8TF05 950 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 NMD3Q96D46 503 aaKnown RBP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 HIC2Q96JB3 615 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 NT5C1BQ96P26 610 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 RBM15Q96T37 977 aaKnown RBP eCLIP5.75□□□□□ -1.49
LIMA1-203ENST00000547825 FAM129AQ9BZQ8 928 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ZWILCHQ9H900 591 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 PARVGQ9HBI0 331 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 NDE1Q9NXR1 346 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 ANKFY1Q9P2R3 1169 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 CTNNAL1Q9UBT7 734 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 SYNGAP1Q96PV0 1343 aa5.75□□□□□ -1.49
LIMA1-203ENST00000547825 GON4LQ3T8J9 2241 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 E2F8A0AVK6 867 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 GDF11O95390 407 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MYBP10242 640 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 EPHA1P21709 976 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 NME2P22392 152 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 EPHB2P29323 1055 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 TM4SF4P48230 202 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 NOVP48745 357 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 ALDH18A1P54886 795 aaKnown RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF252P-AS1Q0IIN9 211 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MEA1Q16626 185 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 PDE4DIPQ5VU43 2346 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 FIGNL1Q6PIW4 674 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MIER3Q7Z3K6 550 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 FBXO11Q86XK2 927 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 ZNF354CQ86Y25 554 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 RHOT2Q8IXI1 618 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MSL3Q8N5Y2 521 aaKnown RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 CDCA5Q96FF9 252 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 SH3GL2Q99962 352 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 MMTAG2Q9BU76 263 aaKnown RBP5.74□□□□□ -1.49
LIMA1-203ENST00000547825 IL17RBQ9NRM6 502 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 PLA2G2EQ9NZK7 142 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 ANGPTL2Q9UKU9 493 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 CHMP2BQ9UQN3 213 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 PCDHB4Q9Y5E5 795 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 SYNJ2BP-COX16A0A087WUM0 186 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 H3BRJ5 948 aa5.74□□□□□ -1.49
LIMA1-203ENST00000547825 ZBED4O75132 1171 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms