RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PCYOX1Q9UHG3 505 aa16.33■□□□□ 0.2
CUX1-211ENST00000546411 OPLAHO14841 1288 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 PPP1R12AO14974 1030 aaPredicted RBP16.32■□□□□ 0.2
CUX1-211ENST00000546411 LUC7L3O95232 432 aaKnown RBP16.32■□□□□ 0.2
CUX1-211ENST00000546411 PYGBP11216 843 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 EPHB2P29323 1055 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 NPNTQ6UXI9 565 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 ADAM32Q8TC27 787 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 NUF2Q9BZD4 464 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 DDIT4Q9NX09 232 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 ABCC6O95255 1503 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 EEF2KO00418 725 aaKnown RBP16.32■□□□□ 0.2
CUX1-211ENST00000546411 OCRLQ01968 901 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 STILQ15468 1287 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 NLRP9Q7RTR0 991 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 KIAA0319LQ8IZA0 1049 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 SLC26A7Q8TE54 656 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 THTPAQ9BU02 230 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 ZNF518BQ9C0D4 1074 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 UBP1Q9NZI7 540 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 SLC12A6Q9UHW9 1150 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 MYH13Q9UKX3 1938 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 MYH8P13535 1937 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 B2RBV5 119 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 MICAL2O94851 1124 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 LSM8O95777 96 aaKnown RBP16.32■□□□□ 0.2
CUX1-211ENST00000546411 YY1P25490 414 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 TSPY1Q01534 308 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 MMRN1Q13201 1228 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 PCSK7Q16549 785 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 ADARB2Q9NS39 739 aaKnown RBP16.32■□□□□ 0.2
CUX1-211ENST00000546411 DMAC2Q9NW81 257 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 STOML1Q9UBI4 398 aa16.32■□□□□ 0.2
CUX1-211ENST00000546411 IPO11Q9UI26 975 aaKnown RBP16.32■□□□□ 0.2
CUX1-211ENST00000546411 BTBD8Q5XKL5 378 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 TRIM67Q6ZTA4 783 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 ATP6V1E2Q96A05 226 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 KIF9Q9HAQ2 790 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 L3MBTL1Q9Y468 752 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 OAZ1P54368 228 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 ANKRD20A8PQ5CZ79 823 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 MAP3K21Q5TCX8 1036 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 RGS9BPQ6ZS82 235 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 C12orf29Q8N999 325 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 SGF29Q96ES7 293 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 CDCA5Q96FF9 252 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 VPS39Q96JC1 886 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 PDGFCQ9NRA1 345 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 SPATA31C2B4DYI2 1134 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 B3GAT3O94766 335 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 MTDHQ86UE4 582 aaKnown RBP16.31■□□□□ 0.2
CUX1-211ENST00000546411 MSL3Q8N5Y2 521 aaKnown RBP16.31■□□□□ 0.2
CUX1-211ENST00000546411 TMEM237Q96Q45 408 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 WWP1Q9H0M0 922 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 PCDH9Q9HC56 1237 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 RPS6KL1Q9Y6S9 549 aa16.31■□□□□ 0.2
CUX1-211ENST00000546411 COL14A1Q05707 1796 aaKnown RBP16.31■□□□□ 0.2
CUX1-211ENST00000546411 PHRF1Q9P1Y6 1649 aaKnown RBP16.31■□□□□ 0.2
CUX1-211ENST00000546411 RPS6KA5O75582 802 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 POLE2P56282 527 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 EXOC3L1Q86VI1 746 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 THEM5Q8N1Q8 247 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 RIBC1Q8N443 379 aaPredicted RBP16.3■□□□□ 0.2
CUX1-211ENST00000546411 PIP4K2CQ8TBX8 421 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 ALKBH8Q96BT7 664 aaKnown RBP16.3■□□□□ 0.2
CUX1-211ENST00000546411 VCPIP1Q96JH7 1222 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 CPA4Q9UI42 421 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 LRFN2Q9ULH4 789 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.3■□□□□ 0.2
CUX1-211ENST00000546411 KCNK1O00180 336 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 ZWINTO95229 277 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 GRIK1P39086 918 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 KYAT1Q16773 422 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 CD302Q8IX05 232 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 TCP10LQ8TDR4 215 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 E2F7Q96AV8 911 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 PABPC5Q96DU9 382 aaKnown RBP16.3■□□□□ 0.2
CUX1-211ENST00000546411 STAMBPL1Q96FJ0 436 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 MFSD14AQ96MC6 490 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 EPAS1Q99814 870 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 OSBPL1AQ9BXW6 950 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 XPNPEP1Q9NQW7 623 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 GOLGA4Q13439 2230 aaKnown RBP16.3■□□□□ 0.2
CUX1-211ENST00000546411 KBTBD13C9JR72 458 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 BGNP21810 368 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 ADRA1DP25100 572 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 TAF6P49848 677 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 CES3Q6UWW8 571 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 ABHD15Q6UXT9 468 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 C3orf20Q8ND61 904 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 YIPF3Q9GZM5 350 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 SLC24A3Q9HC58 644 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.3■□□□□ 0.23e-6■■■■□ 19.4
CUX1-211ENST00000546411 AP4E1Q9UPM8 1137 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 ADORA2AP29274 412 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 PTK6Q13882 451 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 RABGAP1LQ5R372 815 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 RASGEF1CQ8N431 466 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 IPMKQ8NFU5 416 aa16.3■□□□□ 0.2
CUX1-211ENST00000546411 MAGEB18Q96M61 343 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms