RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 SNX25Q9H3E2 840 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 HESX1Q9UBX0 185 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 USP18Q9UMW8 372 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 ZNF148Q9UQR1 794 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 TRPA1O75762 1119 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 RNF8O76064 485 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 TJP3O95049 919 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 GAS8O95995 478 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 IVDP26440 423 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 CD52P31358 61 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 HPDP32754 393 aaPredicted RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 PAN2Q504Q3 1202 aaKnown RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 PKDCCQ504Y2 493 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 XKR4Q5GH76 650 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 ZNF365Q70YC5 407 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 SERINC5Q86VE9 423 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 ADGRF2Q8IZF7 708 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 KCTD6Q8NC69 237 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 SLC35F5Q8WV83 523 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 TMEM121Q9BTD3 319 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 SENP6Q9GZR1 1112 aaPredicted RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 NGRNQ9NPE2 291 aaKnown RBP15.26■□□□□ 0.03
CLIP1-216ENST00000541410 GPATCH2LQ9NWQ4 482 aa15.26■□□□□ 0.03
CLIP1-216ENST00000541410 PAPSS1O43252 624 aaPredicted RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 LIASO43766 372 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 CST8O60676 142 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 HUS1O60921 280 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 GPD1P21695 349 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 TKTP29401 623 aaKnown RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 SP3Q02447 781 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 BYSLQ13895 437 aaKnown RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 SLC29A2Q14542 456 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 HADHQ16836 314 aaKnown RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 LRRC38Q5VT99 294 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 WSCD1Q658N2 575 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 SMC1BQ8NDV3 1235 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 ZNF560Q96MR9 790 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 RUNDC3BQ96NL0 473 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 MTRF1LQ9UGC7 380 aaKnown RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 KIAA1257Q9ULG3 409 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 CASTOR2A6NHX0 329 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 C2CD4BA6NLJ0 364 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 DCDC2CA8MYV0 355 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 MGEA5O60502 916 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 KPNA6O60684 536 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 ATF2P15336 505 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 KDELR1P24390 212 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 IFFO1Q0D2I5 559 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 MTMR3Q13615 1198 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 PTK6Q13882 451 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 OLFML1Q6UWY5 402 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 RSPH3Q86UC2 560 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 FNIP1Q8TF40 1166 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 SLCO2A1Q92959 643 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 SNF8Q96H20 258 aa15.25■□□□□ 0.03
CLIP1-216ENST00000541410 DDX23Q9BUQ8 820 aaKnown RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 UPF3AQ9H1J1 476 aaKnown RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 DDX56Q9NY93 547 aaKnown RBP15.25■□□□□ 0.03
CLIP1-216ENST00000541410 TLDC2A0PJX2 215 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 GOLGA6L10A6NI86 522 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 I3L4J1 428 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 CYB561D2O14569 222 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 TRUB2O95900 331 aaKnown RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 IFNB1P01574 187 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 MYZAPP0CAP1 466 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 SCNN1GP51170 649 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 CLCNKBP51801 687 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 ZNF143P52747 638 aaPredicted RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 ATXN1P54253 815 aaKnown RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 KRT71Q3SY84 523 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 CCDC14Q49A88 953 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 TTC39CQ8N584 583 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 CD99L2Q8TCZ2 262 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 GRK7Q8WTQ7 553 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 PPP1R10Q96QC0 940 aaKnown RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 MAGEB5Q9BZ81 275 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 TMBIM4Q9HC24 238 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 AAASQ9NRG9 546 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 NEU2Q9Y3R4 380 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 XPOTO43592 962 aaKnown RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 KRT7P08729 469 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 NRLP54845 237 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 GSCP56915 257 aaPredicted RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 P3H1Q32P28 736 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 SV2CQ496J9 727 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 RFX6Q8HWS3 928 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 C3orf58Q8NDZ4 430 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 ACTL9Q8TC94 416 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 KHSRPQ92945 711 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 CAPNS2Q96L46 248 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 ATP6V1G3Q96LB4 118 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 TSPYL2Q9H2G4 693 aaPredicted RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 PABPC3Q9H361 631 aaKnown RBP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLIP1-216ENST00000541410 ASNSD1Q9NWL6 643 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 PADI3Q9ULW8 664 aa15.24■□□□□ 0.03
CLIP1-216ENST00000541410 ARL5CA6NH57 179 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 BEST1O76090 585 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 MAP3K6O95382 1288 aa15.23■□□□□ 0.03
CLIP1-216ENST00000541410 ACSL3O95573 720 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms