RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 DGCR14Q96DF8 476 aaKnown RBP13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 PLEKHG4BQ96PX9 1271 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 FAM213AQ9BRX8 229 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 GRIP2Q9C0E4 1043 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 GPAMQ9HCL2 828 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 PARVAQ9NVD7 372 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 C15orf38-AP3S2A0A0A6YYH1 394 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 WEE2P0C1S8 567 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 DSG3P32926 999 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 ELK3P41970 407 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 CYLC2Q14093 348 aaPredicted RBP13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 TCHHL1Q5QJ38 904 aaPredicted RBP13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 SPOPLQ6IQ16 392 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 DNAJC24Q6P3W2 148 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 KLC3Q6P597 504 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 B3GNT6Q6ZMB0 384 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 ZCCHC23Q6ZST2 131 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 ARPINQ7Z6K5 226 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 CHSY1Q86X52 802 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 ACTL9Q8TC94 416 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 IFT122Q9HBG6 1241 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 ARHGEF4Q9NR80 690 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 STRIP2Q9ULQ0 834 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 IRS2Q9Y4H2 1338 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 LOC100653049A0A140TA62 436 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 KRT34O76011 436 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 KRT37O76014 449 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 RAG1P15918 1043 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 PSMC5P62195 406 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 MAP3K10Q02779 954 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 TMEM259Q4ZIN3 620 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 XKR9Q5GH70 373 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 TFDP3Q5H9I0 405 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 CATSPER2Q96P56 530 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 Q9H521 79 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 RMI1Q9H9A7 625 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 MYPNQ86TC9 1320 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 COL16A1Q07092 1604 aaPredicted RBP13.4□□□□□ -0.27
SFSWAP-209ENST00000540469 F8VP50 259 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 CFHP08603 1231 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 OTUD4Q01804 1114 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 VPS72Q15906 364 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 LGSNQ5TDP6 509 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 TMCO4Q5TGY1 634 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ANO5Q75V66 913 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ENOSF1Q7L5Y1 443 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 WDR75Q8IWA0 830 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 RBM12BQ8IXT5 1001 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 CPT1BQ92523 772 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 AGBL1Q96MI9 1066 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 APPL1Q9UKG1 709 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 BLOC1S6Q9UL45 172 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 DTNAQ9Y4J8 743 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 KBTBD13C9JR72 458 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 CST8O60676 142 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 FAM155BO75949 473 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 NCF2P19878 526 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ABCD1P33897 745 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 GRIA2P42262 883 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ECE1P42892 770 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 GALK1P51570 392 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ADARP55265 1226 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 PDE1BQ01064 536 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 BMPR2Q13873 1038 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 CNGA3Q16281 694 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 C1orf228Q6PIY5 440 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ZNF276Q8N554 614 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 RAB3IL1Q8TBN0 382 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 DNAJB4Q9UDY4 337 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 TRPC5Q9UL62 973 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 FAF1Q9UNN5 650 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ZNF711Q9Y462 761 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 CYB561D2O14569 222 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ADCY3O60266 1144 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 PROCP04070 461 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 FOLH1Q04609 750 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 ANKRD20A4Q4UJ75 823 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 RALGPS1Q5JS13 557 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 FAM182AQ5T1J6 154 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 IYDQ6PHW0 289 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 MON1BQ7L1V2 547 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 FAM71DQ8N9W8 422 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 CNBD2Q96M20 576 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 SUDS3Q9H7L9 328 aaPredicted RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 PTTG2Q9NZH5 202 aa13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 APOBEC2Q9Y235 224 aaKnown RBP13.39□□□□□ -0.27
SFSWAP-209ENST00000540469 CAPN8A6NHC0 703 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 PMLP29590 882 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 COPAP53621 1224 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 DMP1Q13316 513 aaPredicted RBP13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 ZYXQ15942 572 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 AAGABQ6PD74 315 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 DENND5BQ6ZUT9 1274 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 ZFPM1Q8IX07 1006 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 SHKBP1Q8TBC3 707 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 KMT5AQ9NQR1 393 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 NYAP2Q9P242 653 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 DRG1Q9Y295 367 aaKnown RBP13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 TCRBV9S1A1TA0A576 114 aa13.38□□□□□ -0.27
SFSWAP-209ENST00000540469 OATP04181 439 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms