RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 KRT37O76014 449 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 IRX5P78411 483 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-213ENST00000540338 DUSP28Q4G0W2 176 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 FAM172AQ8WUF8 416 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 CENPTQ96BT3 561 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 HAPLN2Q9GZV7 340 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 PDZD7Q9H5P4 517 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 PLEKHA5Q9HAU0 1116 aa11.27□□□□□ -0.6
CLIP1-213ENST00000540338 SMCHD1A6NHR9 2005 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 WDR91A4D1P6 747 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 C6orf222P0C671 652 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-213ENST00000540338 RARBP10826 455 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 ZNF157P51786 506 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-213ENST00000540338 WNT7BP56706 349 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 GRAMD1AQ96CP6 724 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 BAIAP2L1Q9UHR4 511 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 ZC3H4Q9UPT8 1303 aaKnown RBP11.27□□□□□ -0.61
CLIP1-213ENST00000540338 GLTPD2A6NH11 291 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 E5RJQ4 531 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 RAD23BP54727 409 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 ARHGAP1Q07960 439 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 FBXO47Q5MNV8 452 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 ANKRD20A3Q5VUR7 823 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 ALLCQ8N6M5 410 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 JOSD2Q8TAC2 188 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 SLCO2A1Q92959 643 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 ADAM33Q9BZ11 813 aa11.27□□□□□ -0.61
CLIP1-213ENST00000540338 C17orf102A2RUQ5 167 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ECHS1P30084 290 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 GRM5P41594 1212 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 MTM1Q13496 603 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 EFHC1Q5JVL4 640 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 PRUNE1Q86TP1 453 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ZNF354CQ86Y25 554 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 DNAJB3Q8WWF6 145 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 CPXM1Q96SM3 734 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 MINDY3Q9H8M7 445 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 DDX20Q9UHI6 824 aaKnown RBP11.26□□□□□ -0.61
CLIP1-213ENST00000540338 CHMP2BQ9UQN3 213 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 CILPO75339 1184 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 APRTP07741 180 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ASPAP45381 313 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 RASSF2P50749 326 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 BCAT1P54687 386 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 IFRD2Q12894 506 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ARL13BQ3SXY8 428 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 SYCP2LQ5T4T6 812 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 CCDC62Q6P9F0 684 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 C4orf33Q8N1A6 199 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 PPM1NQ8N819 430 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 KLHL29Q96CT2 875 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 FAXDC2Q96IV6 333 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 FGFR1OP2Q9NVK5 253 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 GPATCH2LQ9NWQ4 482 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 SAE1Q9UBE0 346 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-213ENST00000540338 USP15Q9Y4E8 981 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-213ENST00000540338 NRCAMQ92823 1304 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ADGRA2Q96PE1 1338 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 COL4A5P29400 1685 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 APOC4-APOC2K7ER74 178 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 APOC2P02655 101 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ITGAVP06756 1048 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ETS1P14921 441 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ZNF143P52747 638 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-213ENST00000540338 GEMIN4P57678 1058 aaKnown RBP11.26□□□□□ -0.61
CLIP1-213ENST00000540338 ERMARDQ5T6L9 678 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 BBS12Q6ZW61 710 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 SPATA21Q7Z572 469 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 FNIP1Q8TF40 1166 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 PWWP2AQ96N64 755 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 TMEM109Q9BVC6 243 aa11.26□□□□□ -0.61
CLIP1-213ENST00000540338 SLC15A5A6NIM6 579 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 H0YGN5 161 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 H3BRJ5 948 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 CREB3O43889 395 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 AKAP5P24588 427 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 AXLP30530 894 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 SLC10A6Q3KNW5 377 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 HIBCHQ6NVY1 386 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-213ENST00000540338 TMEM192Q8IY95 271 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 ELOVL4Q9GZR5 314 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 NFS1Q9Y697 457 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 CCT8L1PA6NM43 557 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 DCDC2CA8MYV0 355 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 SULT1E1P49888 294 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 MFSD10Q14728 455 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 EFHC2Q5JST6 749 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 TLK2Q86UE8 772 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 TBCBQ99426 244 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLIP1-213ENST00000540338 EFR3BQ9Y2G0 817 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 ARL2BPQ9Y2Y0 163 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 IGKV6-21A0A0C4DH24 114 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 KRT38O76015 456 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 NME3Q13232 169 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 ANKRD23Q86SG2 305 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 SCUBE3Q8IX30 993 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 SLC4A11Q8NBS3 891 aa11.25□□□□□ -0.61
CLIP1-213ENST00000540338 FRMD8Q9BZ67 464 aaPredicted RBP11.25□□□□□ -0.61
CLIP1-213ENST00000540338 UBN1Q9NPG3 1134 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms