RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 ART3Q13508 389 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 HIC1Q14526 733 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TCEAL1Q15170 157 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 B3GNT6Q6ZMB0 384 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 DNERQ8NFT8 737 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 DIS3LQ8TF46 1054 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ATP6V1E2Q96A05 226 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 CEP295NLQ96MC4 621 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MRPL1Q9BYD6 325 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ARHGAP20Q9P2F6 1191 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 STX18Q9P2W9 335 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 PCDHGC5Q9Y5F6 944 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ASTN1O14525 1302 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 FZD9O00144 591 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ASNA1O43681 348 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ZC3H11AO75152 810 aaKnown RBP eCLIP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 PRLP01236 227 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 FGFR4P22455 802 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MRPL28Q13084 256 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 CMPK2Q5EBM0 449 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 HP1BP3Q5SSJ5 553 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TMEM63BQ5T3F8 832 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 WLSQ5T9L3 541 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 NCCRP1Q6ZVX7 275 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SCUBE1Q8IWY4 988 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SYTL5Q8TDW5 730 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SLC39A3Q9BRY0 314 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 RUSC1Q9BVN2 902 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 APPL1Q9UKG1 709 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ACTL7BQ9Y614 415 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MAD1L1Q9Y6D9 718 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 KPNA7A9QM74 516 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 PFDN6O15212 129 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TNFAIP8O95379 198 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 FGGP02679 453 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TFRCP02786 760 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 HSPA1AP0DMV8 641 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 HSPA1BP0DMV9 641 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 PPP2R5DQ14738 602 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MAPK11Q15759 364 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 CNGA2Q16280 664 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 HADHQ16836 314 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SGSM1Q2NKQ1 1148 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SPDYAQ5MJ70 313 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ARHGEF16Q5VV41 709 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 CYFIP1Q7L576 1253 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 CHCHD4Q8N4Q1 142 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 S100ZQ8WXG8 99 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SLC35C1Q96A29 364 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 PBXIP1Q96AQ6 731 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TEX13BQ9BXU2 312 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ACAD9Q9H845 621 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 KCNH7Q9NS40 1196 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ANAPC5Q9UJX4 755 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 C1orf232A0A0U1RR37 186 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 UCHL3P15374 230 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 POLR2BP30876 1174 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 NSFP46459 744 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 KCNJ2P63252 427 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MYL7Q01449 175 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ITGADQ13349 1161 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 PDCD4Q53EL6 469 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 CEP78Q5JTW2 689 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 LPCAT2Q7L5N7 544 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 GRPEL2Q8TAA5 225 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TMC2Q8TDI7 906 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MCRS1Q96EZ8 462 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TEPSINQ96N21 525 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 APOL4Q9BPW4 351 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 STRA6Q9BX79 667 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MRPS26Q9BYN8 205 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 FRMD8P1Q9BZ68 369 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 RBM12Q9NTZ6 932 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 COPG2Q9UBF2 871 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TFR2Q9UP52 801 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 BRCA1P38398 1863 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 RNF103-CHMP3A0A140T963 221 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 UNCXA6NJT0 531 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 MT-ND3P03897 115 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 INHBAP08476 426 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 DSG3P32926 999 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 ARPP19P56211 112 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 UBE3AQ05086 875 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 KCNMA1Q12791 1236 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 BLMHQ13867 455 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 RRP1BQ14684 758 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 COG2Q14746 738 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 OASLQ15646 514 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SH3D19Q5HYK7 790 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 AAGABQ6PD74 315 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 GPR141Q7Z602 305 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TCAIMQ8N3R3 496 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 CLEC4DQ8WXI8 215 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 TRNAU1APQ9NX07 287 aaKnown RBP6.3□□□□□ -1.4
PTPRD-214ENST00000540109 GCNT4Q9P109 453 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 SSC5DA1L4H1 1573 aa6.3□□□□□ -1.4
PTPRD-214ENST00000540109 NOTOA8MTQ0 251 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 K7ENM7 598 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 EXOC3O60645 756 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 ALAS1P13196 640 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms