RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 TRIM50Q86XT4 487 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 TMPRSS6Q8IU80 811 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 RNF217Q8TC41 542 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 WDR60Q8WVS4 1066 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 UTP4Q969X6 686 aaKnown RBP13.51□□□□□ -0.25
MSH6-210ENST00000540021 PICK1Q9NRD5 415 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 DNAJC16Q9Y2G8 782 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 GJA3Q9Y6H8 435 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 ROBO1Q9Y6N7 1651 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 UMODL1Q5DID0 1318 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 MED7O43513 233 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 PGM3O95394 542 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 KCNA4P22459 653 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 TUBP50607 506 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 BST1Q10588 318 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 DUOXA2Q1HG44 320 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 MAP3K21Q5TCX8 1036 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 TTC39BQ5VTQ0 682 aaPredicted RBP13.51□□□□□ -0.25
MSH6-210ENST00000540021 DPY19L2P1Q6NXN4 242 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 SH3BP5LQ7L8J4 393 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 MAP4K3Q8IVH8 894 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 DCLK2Q8N568 766 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 RNF148Q8N7C7 305 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 PRPF31Q8WWY3 499 aaKnown RBP13.51□□□□□ -0.25
MSH6-210ENST00000540021 TAS2R1Q9NYW7 299 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 TMX2Q9Y320 296 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 ADAMTS7Q9UKP4 1686 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 CCDC189A1A4V9 331 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 CYB561D2O14569 222 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 ALOX15BO15296 676 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 RFC1P35251 1148 aaPredicted RBP13.51□□□□□ -0.25
MSH6-210ENST00000540021 CNGA3Q16281 694 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 UNC45BQ8IWX7 931 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 OR5B17Q8NGF7 314 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 ZNF395Q9H8N7 513 aaPredicted RBP13.51□□□□□ -0.25
MSH6-210ENST00000540021 CISHQ9NSE2 258 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 ASNSD1Q9NWL6 643 aa13.51□□□□□ -0.25
MSH6-210ENST00000540021 ABHD2P08910 425 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 JAG1P78504 1218 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 CCDC14Q49A88 953 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 PPP1R2P3Q6NXS1 205 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 IYDQ6PHW0 289 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 MFN1Q8IWA4 741 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 GSTCDQ8NEC7 633 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 SNRNP27Q8WVK2 155 aaKnown RBP13.5□□□□□ -0.25
MSH6-210ENST00000540021 PRR11Q96HE9 360 aaPredicted RBP13.5□□□□□ -0.25
MSH6-210ENST00000540021 APOPT1Q96IL0 206 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 OLFM3Q96PB7 478 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 DHX35Q9H5Z1 703 aaKnown RBP13.5□□□□□ -0.25
MSH6-210ENST00000540021 NUB1Q9Y5A7 615 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 ZNF568Q3ZCX4 644 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 ASRGL1Q7L266 308 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 TRIML2Q8N7C3 387 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 SYTL5Q8TDW5 730 aaPredicted RBP13.5□□□□□ -0.25
MSH6-210ENST00000540021 BSNDQ8WZ55 320 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 CLMNQ96JQ2 1002 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 DDX18Q9NVP1 670 aaKnown RBP13.5□□□□□ -0.25
MSH6-210ENST00000540021 CLIC5Q9NZA1 410 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 TAGLN3Q9UI15 199 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 ALS2Q96Q42 1657 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 PRPF4O43172 522 aaKnown RBP eCLIP13.5□□□□□ -0.251e-7■■■■■ 27.4
MSH6-210ENST00000540021 GDF10P55107 478 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 CDH8P55286 799 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 ART3Q13508 389 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 SLC26A11Q86WA9 606 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 ARHGAP18Q8N392 663 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 SH3TC2Q8TF17 1288 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 AGAP3Q96P47 875 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 PPCSQ9HAB8 311 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 NRBP2Q9NSY0 501 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 ANKEF1Q9NU02 776 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 PRKAG3Q9UGI9 489 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 KCNG1Q9UIX4 513 aa13.5□□□□□ -0.25
MSH6-210ENST00000540021 PROCP04070 461 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 ENO3P13929 434 aaPredicted RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 GM2AP17900 193 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 C1QBPQ07021 282 aaKnown RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 MCL1Q07820 350 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 MMRN1Q13201 1228 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 C4orf19Q8IY42 314 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 RNF149Q8NC42 400 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 RBM15BQ8NDT2 890 aaKnown RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 SLC7A6OSQ96CW6 309 aaPredicted RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 CNBD2Q96M20 576 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 ZNF302Q9NR11 478 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 HESX1Q9UBX0 185 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 ASTN2O75129 1339 aaPredicted RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 GOLGA8QA0A0J9YX86 632 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 GOLGA8OA6NCC3 632 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 PRR5-ARHGAP8B1AHC4 643 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 GOLGA8NF8WBI6 632 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 MTA2O94776 668 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 OAS1P00973 400 aaKnown RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 MUTP22033 750 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 COPAP53621 1224 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 HIRAP54198 1017 aaPredicted RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 ARHGAP8P85298 464 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 C15orf52Q6ZUT6 534 aaKnown RBP13.49□□□□□ -0.25
MSH6-210ENST00000540021 DENND5BQ6ZUT9 1274 aa13.49□□□□□ -0.25
MSH6-210ENST00000540021 LRRC71Q8N4P6 559 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms