RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 HUS1O60921 280 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 IL18RAPO95256 599 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 KLF8O95600 359 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 CFIP05156 583 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 SERPINF2P08697 491 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 CHRM1P11229 460 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 ITPKAP23677 461 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 ACAT1P24752 427 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 TIE1P35590 1138 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 SLC6A11P48066 632 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 FAM193AP78312 1265 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 ATP2C1P98194 919 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 GFPT1Q06210 699 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 SOWAHCQ53LP3 525 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 EOGTQ5NDL2 527 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 CRELD2Q6UXH1 353 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 RAB44Q7Z6P3 723 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 GPBP1Q86WP2 473 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 SPATA2LQ8IUW3 424 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 SCN4BQ8IWT1 228 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 SPATA18Q8TC71 538 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 FUBP3Q96I24 572 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 FIZ1Q96SL8 496 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 GTPBP2Q9BX10 602 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 L1RE1Q9UN81 338 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 ADAMTS20P59510 1910 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 ANAPC1Q9H1A4 1944 aa12.47□□□□□ -0.41
CLSTN3-209ENST00000539982 VWA3AA6NCI4 1184 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 TISP43B9A030 160 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 SLC9A3R1O14745 358 aaPredicted RBP12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 AP5Z1O43299 807 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 SLC26A4O43511 780 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 KAT7O95251 611 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 APODP05090 189 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 CYP17A1P05093 508 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 EIF2DP41214 584 aaKnown RBP12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 MAGEA11P43364 429 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 TNFRSF4P43489 277 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 KIR2DL1P43626 348 aaPredicted RBP12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 LHX1P48742 406 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 DHX8Q14562 1220 aaKnown RBP12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 DHCR24Q15392 516 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 RILPL1Q5EBL4 403 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 EMC10Q5UCC4 262 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 FAM171BQ6P995 826 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 C19orf48Q6RUI8 117 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 FILIP1Q7Z7B0 1213 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 SFTPA1Q8IWL2 248 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 PGBD3Q8N328 593 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 HMGB4Q8WW32 186 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 SPATA17Q96L03 361 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 CEP295NLQ96MC4 621 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 CAPN10Q9HC96 672 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 FSCN3Q9NQT6 498 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 GDAP2Q9NXN4 497 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 AGAP1Q9UPQ3 857 aa12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 GCN1Q92616 2671 aaKnown RBP12.46□□□□□ -0.41
CLSTN3-209ENST00000539982 FREM2Q5SZK8 3169 aa12.46□□□□□ -0.42
CLSTN3-209ENST00000539982 ATXN2Q99700 1313 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 TCRBV21S2A2A0A5A6 115 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ARHGAP33O14559 1287 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 GABRDO14764 452 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ADAM23O75077 832 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ITGB3P05106 788 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 KRT18P05783 430 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 CD59P13987 128 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 PCSK1P29120 753 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 POLR2BP30876 1174 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 GRIA2P42262 883 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 SLC7A9P82251 487 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 TFAMQ00059 246 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 MESP2Q0VG99 397 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 SCAPQ12770 1279 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 POSTNQ15063 836 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ARL6IP4Q66PJ3 421 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 RHBDF2Q6PJF5 856 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 SLC36A4Q6YBV0 504 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 RABEPKQ7Z6M1 372 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 PDZD3Q86UT5 571 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 MINDY1Q8N5J2 469 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 LRRC52Q8N7C0 313 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 CACTINQ8WUQ7 758 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 POMGNT1Q8WZA1 660 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 CALML4Q96GE6 196 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ZSCAN31Q96LW9 406 aaPredicted RBP12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 RNF38Q9H0F5 515 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ST6GALNAC4Q9H4F1 302 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ZHX3Q9H4I2 956 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 ARHGEF4Q9NR80 690 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 TRPM5Q9NZQ8 1165 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 IGSF10Q6WRI0 2623 aa12.45□□□□□ -0.42
CLSTN3-209ENST00000539982 LAMA5O15230 3695 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 ZNF840PA6NDX5 716 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 TBCAO75347 108 aaKnown RBP12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 SEC24BO95487 1268 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 ADSSP30520 456 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 PPP3CCP48454 512 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 RPL6Q02878 288 aaKnown RBP12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 ZNF33AQ06730 810 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 RESTQ13127 1097 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms