RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 H3BML4 177 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 AP4M1O00189 453 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 PPEF2O14830 753 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 ALDH1L1O75891 902 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 UBXN7O94888 489 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 CT47B1P0C2W7 299 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-213ENST00000539950 CYP2C9P11712 490 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 RENBPP51606 427 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 ALDH5A1P51649 535 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-213ENST00000539950 SATB1Q01826 763 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 MAPK7Q13164 816 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 CTBP1Q13363 440 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 RNASE12Q5GAN4 147 aaKnown RBP4.43□□□□□ -1.7
VPS13A-213ENST00000539950 DAAM2Q86T65 1068 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 GAS2L3Q86XJ1 694 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 CNGA4Q8IV77 575 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 IZUMO1Q8IYV9 350 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 GALNT4Q8N4A0 578 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 TMEM171Q8WVE6 324 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 LRGUKQ96M69 825 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 SNX18Q96RF0 628 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 PRR25Q96S07 402 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 DPCDQ9BVM2 203 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-213ENST00000539950 TRIM54Q9BYV2 358 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 CIPCQ9C0C6 399 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 ZMAT3Q9HA38 289 aaKnown RBP4.43□□□□□ -1.7
VPS13A-213ENST00000539950 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.43□□□□□ -1.7
VPS13A-213ENST00000539950 KLHL13Q9P2N7 655 aa4.43□□□□□ -1.7
VPS13A-213ENST00000539950 CYP2D7A0A087X1C5 515 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 TCRBV5S1A1TA0A578 114 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 TMEM233B4DJY2 109 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 BTN3A1O00481 513 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 BMP15O95972 392 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 DLDP09622 509 aaKnown RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 CYP2A6P11509 494 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 MMP13P45452 471 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 KRTAP10-9P60411 292 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 E2F1Q01094 437 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 MCL1Q07820 350 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 PIN1Q13526 163 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 GTF2H3Q13889 308 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 TTF1Q15361 905 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 PTCHD3Q3KNS1 767 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 MGAT5BQ3V5L5 792 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 PLA1AQ53H76 456 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 LMBRD2Q68DH5 695 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 B3GNT9Q6UX72 402 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 ZNF783Q6ZMS7 281 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 TPH2Q8IWU9 490 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 BPIFB1Q8TDL5 484 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 KBTBD7Q8WVZ9 684 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 JPH3Q8WXH2 748 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 RAPGEF4Q8WZA2 1011 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 ACO2Q99798 780 aaKnown RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 RTFDC1Q9BY42 306 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 MS4A7Q9GZW8 240 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 VPS16Q9H269 839 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 ANLNQ9NQW6 1124 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 TYW1Q9NV66 732 aaKnown RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 ELOVL5Q9NYP7 299 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 PNMA8BQ9ULN7 279 aaPredicted RBP4.42□□□□□ -1.7
VPS13A-213ENST00000539950 WDR17Q8IZU2 1322 aa4.42□□□□□ -1.7
VPS13A-213ENST00000539950 BCAR3O75815 825 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 PRKCBP05771 671 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 MYBP10242 640 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 KITP10721 976 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 XRCC6P12956 609 aaKnown RBP eCLIP4.41□□□□□ -1.7
VPS13A-213ENST00000539950 PRKAG1P54619 331 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 PSG6Q00889 435 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 RABEP1Q15276 862 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 Q4G0T1 1027 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 MIS18BP1Q6P0N0 1132 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 MTHFD1LQ6UB35 978 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 FAM177A1Q8N128 213 aaPredicted RBP4.41□□□□□ -1.7
VPS13A-213ENST00000539950 MPP5Q8N3R9 675 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 SLC35G2Q8TBE7 412 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 STAG1Q8WVM7 1258 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 PPP2R3CQ969Q6 453 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 ZC3H10Q96K80 434 aaKnown RBP4.41□□□□□ -1.7
VPS13A-213ENST00000539950 AIFM3Q96NN9 605 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 TAAR9Q96RI9 348 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 C17orf80Q9BSJ5 609 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 DPH1Q9BZG8 443 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 SMURF2Q9HAU4 748 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 GBA2Q9HCG7 927 aaPredicted RBP4.41□□□□□ -1.7
VPS13A-213ENST00000539950 NMRK2Q9NPI5 230 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 TRMT13Q9NUP7 481 aaKnown RBP4.41□□□□□ -1.7
VPS13A-213ENST00000539950 ASIC5Q9NY37 505 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 TUBA8Q9NY65 449 aaPredicted RBP4.41□□□□□ -1.7
VPS13A-213ENST00000539950 ZNF180Q9UJW8 692 aa4.41□□□□□ -1.7
VPS13A-213ENST00000539950 A0A1W2PPL8 197 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 E5RJQ4 531 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 AKAP10O43572 662 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 CHRM5P08912 532 aaPredicted RBP4.4□□□□□ -1.71
VPS13A-213ENST00000539950 HSPA6P17066 643 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 RAB27AP51159 221 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 ANAPC15P60006 121 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 CERKLQ49MI3 558 aaPredicted RBP4.4□□□□□ -1.71
VPS13A-213ENST00000539950 SERPINA13PQ6UXR4 307 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 BCDIN3DQ7Z5W3 292 aaKnown RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms