RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TASP1Q9H6P5 420 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 IL21Q9HBE4 155 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 PTPRHQ9HD43 1115 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 SLC38A7Q9NVC3 462 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 CACNA2D2Q9NY47 1150 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 RWDD2AQ9UIY3 292 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 PCDHB8Q9UN66 801 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 SLC27A5Q9Y2P5 690 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 ASB3Q9Y575 518 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 ANK1P16157 1881 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 PLXND1Q9Y4D7 1925 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 PTPRBP23467 1997 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 URB1O60287 2271 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 FGFR1OPO95684 399 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 DRD1P21728 446 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 GABRR2P28476 465 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 GBP1P32455 592 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 LRRC63Q05C16 580 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 SCAPQ12770 1279 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 GPR17Q13304 367 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 PLD1Q13393 1074 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 DMC1Q14565 340 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 BMT2Q1RMZ1 405 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 TRIM68Q6AZZ1 485 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 CYP2U1Q7Z449 544 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 AOPEPQ8N6M6 819 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 RNF214Q8ND24 703 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 RPLP0P6Q8NHW5 317 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 ADAM32Q8TC27 787 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 NOC3LQ8WTT2 800 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 PGLYRP2Q96PD5 576 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 TCHPQ9BT92 498 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 EBF3Q9H4W6 596 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 SLC32A1Q9H598 525 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 THG1LQ9NWX6 298 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 ANKFY1Q9P2R3 1169 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 TNFSF13BQ9Y275 285 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 NUB1Q9Y5A7 615 aa13.4□□□□□ -0.26
CLSTN3-208ENST00000538933 SHROOM3Q8TF72 1996 aa13.4□□□□□ -0.27
CLSTN3-208ENST00000538933 TRIM49BA6NDI0 452 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 H0Y626 953 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 M0QZQ0 153 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 TULP1O00294 542 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 PDXKO00764 312 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 PPP1R37O75864 691 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 TRIM16O95361 564 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 RPL13P26373 211 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 MYL5Q02045 173 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 FBXO43Q4G163 708 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 ARMCX5Q6P1M9 558 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 APBB1IPQ7Z5R6 666 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 C11orf74Q86VG3 221 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 RASSF3Q86WH2 238 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 CREBRFQ8IUR6 639 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 TMEM130Q8N3G9 435 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 TTC9BQ8N6N2 239 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 RIN3Q8TB24 985 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 BPIFA3Q9BQP9 254 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 CDT1Q9H211 546 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 TMEM74BQ9NUR3 256 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 CNTN3Q9P232 1028 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 CGNQ9P2M7 1197 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 CCL26Q9Y258 94 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 ATMQ13315 3056 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 ZNF462Q96JM2 2506 aa13.39□□□□□ -0.27
CLSTN3-208ENST00000538933 PCDH15Q96QU1 1955 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 CYSRT1A8MQ03 144 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 ABLIM1O14639 778 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 CLIC2O15247 247 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 SOAT2O75908 522 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 FGF19O95750 216 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 HARSP12081 509 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 ARSAP15289 507 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 ALDH1A3P47895 512 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 DGKEP52429 567 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 OSTNP61366 133 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 SNRPFP62306 86 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 CYP4F8P98187 520 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 KCNA1Q09470 495 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 LMAN2Q12907 356 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 USP39Q53GS9 565 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 TRIM61Q5EBN2 209 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 SLFN12LQ6IEE8 588 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 FAM114A1Q8IWE2 563 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 CSGALNACT2Q8N6G5 542 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 ATAD1Q8NBU5 361 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 OLIG1Q8TAK6 271 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 POMGNT1Q8WZA1 660 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 PIGKQ92643 395 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 ACO2Q99798 780 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 P2RY13Q9BPV8 354 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 CCDC94Q9BW85 323 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 TARS2Q9BW92 718 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 STRA6Q9BX79 667 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 CBX8Q9HC52 389 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 TOPORSQ9NS56 1045 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 MAGEC2Q9UBF1 373 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 NFE2L3Q9Y4A8 694 aa13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 TIMM13Q9Y5L4 95 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-208ENST00000538933 MTMR11A4FU01 709 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms