RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, human

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-210	ENST00000534172	PCDHA6	Q9UN73	950 aa		4.09	□□□□□ -1.76
CSMD3-210	ENST00000534172	TMX2	Q9Y320	296 aa		4.09	□□□□□ -1.76
CSMD3-210	ENST00000534172	TRAPPC8	Q9Y2L5	1435 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	SUPT6H	Q7KZ85	1726 aa	Known RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172		A0A1W2PPC4	97 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172		A0A1W2PS29	197 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	LEFTY2	O00292	366 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	NCAM2	O15394	837 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	SKAP2	O75563	359 aa	Predicted RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	PYGL	P06737	847 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	VEGFA	P15692	232 aa	Predicted RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	KCNA2	P16389	499 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	SLC6A2	P23975	617 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	VIPR2	P41587	438 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	ZNF135	P52742	658 aa	Predicted RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	ARFIP2	P53365	341 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	PSMC1	P62191	440 aa	Known RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	SLFN5	Q08AF3	891 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	HLX	Q14774	488 aa	Predicted RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	CDSN	Q15517	529 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	ARL13B	Q3SXY8	428 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	TIGD2	Q4W5G0	525 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	PDCD4	Q53EL6	469 aa	Known RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	MIIP	Q5JXC2	388 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	SPDYA	Q5MJ70	313 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	SFRP4	Q6FHJ7	346 aa	Predicted RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	CYP26C1	Q6V0L0	522 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	PALM2	Q8IXS6	379 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	CACNA2D3	Q8IZS8	1091 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	CCDC89	Q8N998	374 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	IL17D	Q8TAD2	202 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	EXTL1	Q92935	676 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	NMD3	Q96D46	503 aa	Known RBP	4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	MSLNL	Q96KJ4	702 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	ITM2C	Q9NQX7	267 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	STK32B	Q9NY57	414 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	GRHPR	Q9UBQ7	328 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	CEP83	Q9Y592	693 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	PTPRG	P23470	1445 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	NPAT	Q14207	1427 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	MROH2A	A6NES4	1674 aa		4.08	□□□□□ -1.76
CSMD3-210	ENST00000534172	TMEM200C	A6NKL6	621 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	PRSS47	A8MTI9	375 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172		J3KRW8	73 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	INMT	O95050	263 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	DHRS4L1	P0CG22	281 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	FGFR4	P22455	802 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	SLC6A4	P31645	630 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	ALDH9A1	P49189	494 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	MMP14	P50281	582 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	ANXA11	P50995	505 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	RPS7	P62081	194 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	NOMO2	Q5JPE7	1267 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	LY6G5C	Q5SRR4	150 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	HYI	Q5T013	277 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	SP5	Q6BEB4	398 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	SUGP1	Q8IWZ8	645 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	CFAP52	Q8N1V2	620 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	NAXE	Q8NCW5	288 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	CACTIN	Q8WUQ7	758 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	FUBP1	Q96AE4	644 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	MARS2	Q96GW9	593 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	UBXN10	Q96LJ8	280 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	TMEM120A	Q9BXJ8	343 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	GJB4	Q9NTQ9	266 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	FHOD3	Q2V2M9	1422 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	ABCA9	Q8IUA7	1624 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	RGS12	O14924	1447 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	UACA	Q9BZF9	1416 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172		A0A1B0GVC2	190 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	MBD3L4	A6NDZ8	208 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	MBD3L3	A6NE82	208 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	AHRR	A9YTQ3	701 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	POLRMT	O00411	1230 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	PRRG2	O14669	202 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	PLA2G6	O60733	806 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	AHSG	P02765	367 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	ATXN1L	P0C7T5	689 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	EEF1G	P26641	437 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	TUBA3C	Q13748	450 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	TUBA3E	Q6PEY2	450 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	RINL	Q6ZS11	566 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	POC1B	Q8TC44	478 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	TRAPPC12	Q8WVT3	735 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	C18orf8	Q96DM3	657 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	LTV1	Q96GA3	475 aa	Predicted RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	PPM1M	Q96MI6	270 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	PLEKHG4B	Q96PX9	1271 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	TRIB1	Q96RU8	372 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	SPATA5L1	Q9BVQ7	753 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	KRTAP9-8	Q9BYQ0	159 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	PDP2	Q9P2J9	529 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	AFF4	Q9UHB7	1163 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	SHOC2	Q9UQ13	582 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	XIRP1	Q702N8	1843 aa	Known RBP	4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	SHPRH	Q149N8	1683 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	ZFYVE16	Q7Z3T8	1539 aa		4.07	□□□□□ -1.76
CSMD3-210	ENST00000534172	PRAMEF33	A0A0G2JMD5	474 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms